Detailed information NTG0772987

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PF552_RS17325
• Genome accession: NZ_CP115632
• Coordinates: 3596910..3597770 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain 2022CK-00063
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3591910..3602770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF552_RS17305 (PF552_17305)	secG	3592515..3592844 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
PF552_RS17310 (PF552_17310)	tpiA	3592857..3593651 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
PF552_RS17315 (PF552_17315)	pilB	3593942..3595654 (+)	1713	Protein_3380	type IV-A pilus assembly ATPase PilB	-
PF552_RS17320 (PF552_17320)	pilC	3595684..3596910 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
PF552_RS17325 (PF552_17325)	pilD	3596910..3597770 (+)	861	WP_001152273.1	A24 family peptidase	Machinery gene
PF552_RS17330 (PF552_17330)	coaE	3597772..3598368 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
PF552_RS17335 (PF552_17335)	-	3598365..3599279 (-)	915	WP_000075014.1	DMT family transporter	-
PF552_RS17340 (PF552_17340)	rlmB	3599315..3600064 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PF552_RS17345 (PF552_17345)	-	3600166..3600492 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
PF552_RS17350 (PF552_17350)	-	3600569..3601879 (-)	1311	WP_031959605.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=772987 PF552_RS17325 WP_001152273.1 3596910..3597770(+) (pilD) [Acinetobacter baumannii strain 2022CK-00063]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=772987 PF552_RS17325 WP_001152273.1 3596910..3597770(+) (pilD) [Acinetobacter baumannii strain 2022CK-00063]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441