Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QRO24_RS00865 Genome accession   NZ_CP127829
Coordinates   182374..184197 (+) Length   607 a.a.
NCBI ID   WP_021461079.1    Uniprot ID   A0AAX3XE47
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177374..189197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS00845 (QRO24_00845) msbA 178652..180400 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QRO24_RS00850 (QRO24_00850) lpxK 180421..181398 (+) 978 WP_039092870.1 tetraacyldisaccharide 4'-kinase -
  QRO24_RS00855 (QRO24_00855) - 181395..181592 (+) 198 WP_013745481.1 Trm112 family protein -
  QRO24_RS00860 (QRO24_00860) kdsB 181594..182370 (+) 777 WP_409025900.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QRO24_RS00865 (QRO24_00865) uvrC 182374..184197 (+) 1824 WP_021461079.1 excinuclease ABC subunit UvrC Machinery gene
  QRO24_RS00870 (QRO24_00870) pgsA 184273..184821 (+) 549 WP_018346416.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRO24_RS00875 (QRO24_00875) - 184923..185846 (+) 924 WP_320062257.1 transposase -
  QRO24_RS00880 (QRO24_00880) fabR 185980..186597 (-) 618 WP_018346415.1 HTH-type transcriptional repressor FabR -
  QRO24_RS00885 (QRO24_00885) oxyR 186600..187514 (-) 915 WP_021461082.1 DNA-binding transcriptional regulator OxyR -
  QRO24_RS00890 (QRO24_00890) - 187580..188008 (-) 429 WP_039143276.1 DUF2251 domain-containing protein -
  QRO24_RS00895 (QRO24_00895) - 188020..188496 (-) 477 WP_409025901.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69124.06 Da        Isoelectric Point: 9.4672

>NTDB_id=772834 QRO24_RS00865 WP_021461079.1 182374..184197(+) (uvrC) [Gallibacterium anatis strain OH/Ck/12965/20]
MFDAKKFLADVSENPGVYRMYDRNNTVIYVGKAKNLKKRLSSYFRKNVNSKKTEALVASIDHIDTTITHSETEALLLEHN
FIKQYQPRYNVLLRDDKSYPYILLTHERHPRITSYRGAKKIAGEYFGPYPHSSAVRETLSLMQKLFPIRQCENSVYNNRS
RPCLQYQIKRCLAPCVAGYVTDEEYQQQVELARLFLQGKDQQVVTHLIEKMEQASNRLDFEAAARYRDQIQAVRSVMEKQ
FVSNDRLDDIDIIAIAYKSGLACVQVLFIRHGKILGNRSYFPKIPANTQIAEVIETFLGQFYLQAHQGRSIPDSIVIDHS
LAGKEMLQTLLSEQAGRQVQIQDKVKGEKNRYLQLAQTNASVALTTQLKQQGRIEERYQALQQLLHMDKIQRMECFDISH
TMGENTIASCVVFGSEGPLKSDYRRFNIEGTHGDDYAAMEQALKKRYDKDLTAEKIPDIIFIDGGKGQLNRALAVFDNLN
VSWNKHKPLLIGVAKGVDRKAGLETLLIGNSEREIHLEPDNLALHLIQHIRDESHNHAISGHRKKRQKAFIQSGLESIEG
VGAKRRQALLKYLGGLQGVRAATIDELASVPGISRSLAEKIFETLKH

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=772834 QRO24_RS00865 WP_021461079.1 182374..184197(+) (uvrC) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGTTTGATGCAAAAAAATTCCTTGCTGATGTTTCGGAAAATCCGGGTGTTTATCGGATGTATGATCGGAATAACACTGT
TATTTATGTCGGCAAGGCAAAAAATCTCAAAAAACGGCTTTCCAGTTATTTCCGTAAAAATGTTAATAGCAAAAAAACGG
AAGCACTGGTAGCTTCGATCGATCATATCGATACGACGATCACCCATTCGGAAACGGAAGCATTGCTGCTTGAACATAAT
TTCATCAAGCAGTATCAGCCTCGTTACAATGTGTTGTTACGAGATGATAAATCCTATCCCTATATTTTATTAACTCACGA
GCGTCATCCACGAATTACCTCATATCGTGGTGCAAAGAAAATCGCCGGTGAGTATTTTGGGCCTTATCCGCACTCTTCCG
CTGTGCGAGAAACCTTATCATTAATGCAGAAGTTGTTCCCGATTCGTCAGTGTGAGAACAGTGTTTATAACAACCGTTCC
CGTCCTTGCTTGCAATATCAAATTAAACGCTGTTTGGCGCCTTGTGTTGCCGGATATGTAACGGATGAAGAGTATCAGCA
ACAGGTGGAGTTGGCGCGCCTGTTTTTGCAAGGTAAAGATCAGCAGGTGGTGACCCATCTGATTGAAAAAATGGAGCAGG
CGAGCAATAGATTAGATTTTGAAGCAGCGGCACGTTATCGCGATCAGATTCAGGCGGTGCGATCCGTAATGGAAAAACAG
TTTGTCAGTAATGATCGTTTGGATGACATCGATATTATCGCGATTGCGTACAAATCCGGATTGGCTTGTGTGCAAGTGTT
GTTTATTCGTCACGGAAAAATATTGGGAAATCGCAGTTATTTCCCGAAAATTCCGGCAAATACGCAGATTGCTGAAGTTA
TTGAAACTTTTTTAGGGCAATTTTATTTACAGGCACATCAAGGGCGGAGTATTCCCGATTCGATTGTGATTGATCACTCT
TTAGCCGGAAAAGAGATGTTACAAACGTTATTGAGTGAACAGGCAGGACGTCAAGTTCAGATTCAAGATAAAGTAAAAGG
CGAGAAAAACCGTTATTTACAGTTAGCGCAAACTAATGCTTCGGTGGCATTAACAACGCAATTAAAACAACAAGGCAGAA
TAGAAGAGCGTTATCAAGCGTTGCAACAGTTGCTGCATATGGACAAAATCCAACGAATGGAGTGTTTCGACATTAGCCAT
ACAATGGGGGAAAATACGATTGCTTCCTGTGTTGTTTTTGGTTCGGAAGGGCCGTTAAAATCGGATTACCGCCGTTTTAA
TATTGAAGGTACACACGGTGATGATTATGCGGCGATGGAGCAGGCATTGAAGAAAAGATACGATAAAGATCTCACGGCAG
AGAAGATACCTGATATTATTTTTATTGACGGTGGTAAAGGGCAGCTCAATCGTGCTTTGGCAGTGTTTGATAATCTGAAT
GTGAGTTGGAACAAACACAAGCCGTTATTAATCGGCGTGGCGAAAGGGGTTGATCGTAAAGCCGGTTTGGAAACCTTGTT
AATCGGTAACAGTGAACGGGAGATTCATTTAGAACCGGACAATTTAGCACTGCATTTAATCCAGCATATTCGAGATGAAT
CACATAATCACGCTATTTCCGGACACCGTAAAAAACGACAGAAAGCATTTATTCAAAGTGGTTTGGAGAGTATTGAGGGC
GTTGGTGCAAAACGACGTCAAGCACTGTTGAAATATCTTGGCGGTTTGCAGGGGGTTCGTGCCGCTACGATAGATGAATT
GGCTTCCGTACCCGGAATTTCACGTTCATTAGCTGAAAAAATCTTTGAAACACTAAAACATTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(202-234)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-539)

GIY-YIG catalytic domain (GIY-YIG)

(15-90)

Helix-hairpin-helix domain (HHH_5)

(555-606)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX3XE47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.545

99.176

0.362