Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   QRO24_RS00840 Genome accession   NZ_CP127829
Coordinates   176240..178579 (+) Length   779 a.a.
NCBI ID   WP_409026253.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 171240..183579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS00815 (QRO24_00815) - 172768..172893 (-) 126 WP_407902716.1 hypothetical protein -
  QRO24_RS00820 (QRO24_00820) - 172862..173134 (-) 273 WP_409025898.1 hypothetical protein -
  QRO24_RS00825 (QRO24_00825) folK 173286..173768 (-) 483 WP_039092866.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QRO24_RS00830 (QRO24_00830) pcnB 173768..175276 (-) 1509 WP_409025899.1 polynucleotide adenylyltransferase PcnB -
  QRO24_RS00835 (QRO24_00835) dksA 175413..175862 (-) 450 WP_031204683.1 RNA polymerase-binding protein DksA -
  QRO24_RS00840 (QRO24_00840) rec2 176240..178579 (+) 2340 WP_409026253.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QRO24_RS00845 (QRO24_00845) msbA 178652..180400 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QRO24_RS00850 (QRO24_00850) lpxK 180421..181398 (+) 978 WP_039092870.1 tetraacyldisaccharide 4'-kinase -
  QRO24_RS00855 (QRO24_00855) - 181395..181592 (+) 198 WP_013745481.1 Trm112 family protein -
  QRO24_RS00860 (QRO24_00860) kdsB 181594..182370 (+) 777 WP_409025900.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 90047.74 Da        Isoelectric Point: 8.9938

>NTDB_id=772833 QRO24_RS00840 WP_409026253.1 176240..178579(+) (rec2) [Gallibacterium anatis strain OH/Ck/12965/20]
MYLPFAWIFLTAFWGVFFTVASLLALWLIRKKNQWSSVIISIIFSCCWCLVLIQQLITQAQYVQTLPKKQRAQIMIEKVL
HQRDYQTAIALLKFSDQDENYRFYLSWQAPQPLAAGQSWLGEVTLKPLASRANFGGFQRQKWLYANHIVGYAVVKNAVLV
ADHPDLRERLLRHNLDLWQQQPQSELFLALGFGDKRFLSQDTLQLFQQTGTAHLIAISGLHIGLVMLLGVALARSVQYFL
PAHRITPFLPLLFGGMCALLYSYLADFSIPTVRAIIALIFLLWLRFFRGYLNWWQCYVRCIAIFVLLDPLILLSDSFWLS
ALAVLCLLIWNHLFPLSVCSVRGKKLHQFGKITYYILALIHLQIGLFLLFTPITLFFFSGFNFFNLWINLWIVPIFSFVL
IPLILFSILTFDYFHSWALCQFIAQQCVEGLKIFKTGWHPVSELENLWISLIFLGLCLLWGMFCIRYAKYQRTKTDEHHW
LPTSTLFRLEVSALVERTDFQTILKIIGMILGIMLWQLGFYYYQQYRTLWTLEMLDVGQGMSILIRQNGKGVLYDTAASW
RGGSMAELEIIPYLQRQGIELEAIIVSHDDNDHSGGAEILLRYFPNATLITSSEKTYAGKTPEPCYQGVQWRWRDLNWQV
IAPYKVEKTAKNHQSCVMLINDGKHNVLLTGDLDKTAELQYLEHFPTIDILQVAHHGSRTSTSTTFLQKTAPKIALISAG
IGNQWHFPHQDIISRLRQFQVDTLVTATVGQIRLRFTKQGNIEVETARTLLQPWFKQLL

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=772833 QRO24_RS00840 WP_409026253.1 176240..178579(+) (rec2) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGTATTTGCCGTTTGCATGGATTTTTTTGACTGCATTTTGGGGTGTTTTTTTCACTGTCGCTTCATTACTTGCGCTATG
GTTAATAAGAAAGAAAAATCAGTGGAGTAGTGTGATCATTTCAATAATATTTTCGTGTTGTTGGTGTCTGGTTTTGATAC
AACAACTCATCACGCAAGCACAATATGTGCAGACACTCCCGAAGAAACAGCGCGCGCAGATTATGATTGAAAAAGTTTTG
CATCAACGGGATTATCAAACGGCAATTGCATTATTGAAATTTTCGGATCAAGATGAGAACTATCGTTTTTATTTGAGTTG
GCAAGCACCGCAACCGCTGGCAGCCGGACAATCGTGGCTAGGAGAAGTCACGCTAAAACCATTAGCGTCAAGAGCCAATT
TTGGTGGTTTTCAGCGTCAAAAATGGCTGTATGCAAATCATATTGTTGGCTATGCTGTTGTGAAAAATGCAGTTTTGGTT
GCAGATCATCCCGATTTGCGCGAGCGATTATTGCGACATAATTTGGATTTATGGCAACAGCAACCACAGTCGGAATTATT
TCTTGCATTGGGATTTGGTGATAAGCGTTTTTTGAGTCAGGACACGTTGCAACTGTTTCAACAGACCGGAACAGCGCATT
TAATTGCGATTTCAGGCTTGCATATCGGTTTAGTAATGTTGTTGGGGGTGGCTTTAGCGCGTAGTGTGCAGTATTTCTTG
CCGGCACATCGGATTACGCCGTTTTTGCCGCTATTATTCGGTGGAATGTGTGCGTTGTTATACAGCTATTTAGCCGATTT
TTCGATTCCGACTGTCCGAGCCATTATTGCATTGATTTTTCTATTGTGGCTAAGATTTTTTCGCGGTTATTTAAATTGGT
GGCAATGTTATGTGCGTTGTATCGCGATTTTTGTGCTATTGGATCCGCTTATTCTGTTAAGTGATAGCTTTTGGCTATCC
GCATTGGCGGTGTTATGTTTATTGATATGGAATCATCTGTTTCCCTTATCTGTTTGCTCGGTGCGAGGAAAAAAACTCCA
TCAATTCGGTAAAATTACTTATTACATTTTGGCGCTTATTCATCTACAAATAGGACTGTTTCTGCTATTTACACCAATTA
CACTCTTCTTTTTTTCCGGTTTTAACTTCTTTAATTTATGGATTAATTTATGGATTGTGCCGATTTTCAGTTTTGTACTC
ATTCCATTAATTTTGTTCTCCATTTTAACGTTTGATTACTTCCACAGTTGGGCGTTATGCCAGTTTATTGCACAACAATG
TGTTGAGGGCTTAAAGATATTTAAAACTGGCTGGCATCCTGTTTCAGAGCTGGAAAATCTCTGGATAAGCTTGATTTTTC
TAGGCTTGTGTTTGCTTTGGGGAATGTTTTGTATTCGCTATGCTAAATATCAACGAACTAAAACGGATGAGCATCATTGG
TTGCCGACATCAACGCTATTCCGTTTAGAGGTGTCTGCTTTAGTTGAGCGTACCGATTTTCAAACTATTTTGAAAATAAT
AGGAATGATTTTAGGCATAATGCTATGGCAATTAGGCTTCTATTATTATCAACAATATCGCACTTTATGGACGCTGGAAA
TGTTGGATGTAGGGCAGGGAATGTCGATATTGATCCGGCAAAATGGCAAAGGCGTTTTGTATGATACAGCCGCTTCGTGG
CGTGGTGGCAGTATGGCTGAATTGGAAATTATTCCCTATTTGCAACGACAAGGTATTGAATTGGAAGCGATTATTGTGAG
TCACGATGATAATGATCATAGCGGTGGCGCTGAAATTTTGCTTCGTTATTTTCCGAATGCCACATTGATCACTTCGTCCG
AAAAAACATATGCCGGAAAAACGCCTGAACCCTGTTATCAAGGTGTTCAATGGCGTTGGCGTGATTTAAATTGGCAAGTG
ATAGCGCCGTATAAAGTAGAAAAAACAGCGAAAAATCATCAATCTTGCGTGATGTTGATCAATGATGGCAAACATAATGT
CCTGTTAACCGGTGATCTGGATAAAACGGCGGAATTACAGTATTTAGAACATTTCCCGACGATTGATATTTTGCAGGTGG
CGCATCACGGTAGCCGTACTTCGACCAGTACCACATTTTTGCAAAAAACAGCACCGAAGATAGCATTAATTTCTGCCGGT
ATAGGCAATCAATGGCATTTTCCGCATCAGGACATTATTTCACGATTACGGCAATTTCAAGTTGATACGCTGGTAACGGC
AACCGTAGGACAGATTCGATTACGTTTTACCAAGCAGGGCAATATTGAAGTTGAAACGGCAAGAACATTATTACAACCTT
GGTTTAAGCAGTTACTTTAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(190-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(536-720)

Domain of unknown function (DUF4131) (DUF4131)

(12-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.083

93.196

0.374