NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	PF449_RS01725	Genome accession	NZ_CP115623
Coordinates	352489..353349 (-)	Length	286 a.a.
NCBI ID	WP_001152273.1	Uniprot ID	A0A836M4G0
Organism	Acinetobacter baumannii strain 2022CK-00340
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 347489..358349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF449_RS01700 (PF449_01700)	-	348380..349690 (+)	1311	WP_031959605.1	tetratricopeptide repeat protein	-
PF449_RS01705 (PF449_01705)	-	349767..350093 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
PF449_RS01710 (PF449_01710)	rlmB	350195..350944 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
PF449_RS01715 (PF449_01715)	-	350980..351894 (+)	915	WP_000075014.1	DMT family transporter	-
PF449_RS01720 (PF449_01720)	coaE	351891..352487 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
PF449_RS01725 (PF449_01725)	pilD	352489..353349 (-)	861	WP_001152273.1	A24 family peptidase	Machinery gene
PF449_RS01730 (PF449_01730)	pilC	353349..354575 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
PF449_RS01735 (PF449_01735)	pilB	354605..356317 (-)	1713	WP_031959606.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PF449_RS01740 (PF449_01740)	tpiA	356608..357402 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
PF449_RS01745 (PF449_01745)	secG	357415..357744 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32088.53 Da Isoelectric Point: 7.1041

                                >NTDB_id=772833 PF449_RS01725 WP_001152273.1 352489..353349(-) (pilD) [Acinetobacter baumannii strain 2022CK-00340]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=772833 PF449_RS01725 WP_001152273.1 352489..353349(-) (pilD) [Acinetobacter baumannii strain 2022CK-00340]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA

ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A836M4G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0772833