Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QRA12_RS12840 Genome accession   NZ_CP127345
Coordinates   2629054..2629794 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA11     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2624054..2634794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA12_RS12815 (QRA12_12800) hemH 2624930..2625853 (-) 924 WP_000162881.1 ferrochelatase -
  QRA12_RS12820 (QRA12_12805) hemE 2625911..2626948 (-) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  QRA12_RS12825 (QRA12_12810) - 2626938..2627048 (-) 111 WP_042744719.1 hypothetical protein -
  QRA12_RS12830 (QRA12_12815) traP 2627211..2627714 (+) 504 WP_000737978.1 signal transduction protein TRAP -
  QRA12_RS12835 (QRA12_12820) ecsB 2627838..2629061 (-) 1224 WP_001245771.1 ABC transporter permease EcsB -
  QRA12_RS12840 (QRA12_12825) pptA 2629054..2629794 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  QRA12_RS12845 (QRA12_12830) - 2629928..2630350 (+) 423 WP_000004981.1 HIT family protein -
  QRA12_RS12850 (QRA12_12835) - 2630492..2630857 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  QRA12_RS12855 (QRA12_12840) - 2631590..2632147 (+) 558 WP_000477962.1 DUF3267 domain-containing protein -
  QRA12_RS12860 (QRA12_12845) - 2632352..2633314 (+) 963 WP_000782121.1 foldase protein PrsA -
  QRA12_RS12865 (QRA12_12850) yhaM 2633435..2634376 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=772539 QRA12_RS12840 WP_000216874.1 2629054..2629794(-) (pptA) [Staphylococcus aureus strain MRSA11]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=772539 QRA12_RS12840 WP_000216874.1 2629054..2629794(-) (pptA) [Staphylococcus aureus strain MRSA11]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACATATAGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAAACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545