NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QOM21_RS24375	Genome accession	NZ_CP127172
Coordinates	5563139..5563816 (+)	Length	225 a.a.
NCBI ID	WP_393895571.1	Uniprot ID	-
Organism	Streptomyces sp. Pv4-95 voucher LV 740
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5558139..5568816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOM21_RS24340 (QOM21_24345)	-	5559011..5559205 (+)	195	WP_393895537.1	hypothetical protein	-
QOM21_RS24345 (QOM21_24350)	-	5559202..5559582 (-)	381	WP_407553166.1	arsenate reductase family protein	-
QOM21_RS24350 (QOM21_24355)	-	5559723..5560088 (+)	366	WP_407553167.1	hypothetical protein	-
QOM21_RS24365 (QOM21_24370)	tig	5560789..5562177 (+)	1389	WP_407553168.1	trigger factor	-
QOM21_RS24370 (QOM21_24375)	clpP	5562469..5563071 (+)	603	WP_407555782.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QOM21_RS24375 (QOM21_24380)	clpP	5563139..5563816 (+)	678	WP_393895571.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QOM21_RS24380 (QOM21_24385)	clpX	5563974..5565260 (+)	1287	WP_407553169.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
QOM21_RS24385 (QOM21_24390)	-	5565456..5566427 (-)	972	WP_407553170.1	hypothetical protein	-

Sequence

Protein

Download Length: 225 a.a. Molecular weight: 24708.93 Da Isoelectric Point: 4.5704

                                >NTDB_id=771386 QOM21_RS24375 WP_393895571.1 5563139..5563816(+) (clpP) [Streptomyces sp. Pv4-95 voucher LV 740]

MNNFHGSGLYEGAESEFSGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP

DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD

LEIAANEILRMRSQLEDLLAKHSSTPIEKIRDDIERDKILTAEESLAYGLVDQIVSTRKSSVSIG

Nucleotide

Download Length: 678 bp

                                >NTDB_id=771386 QOM21_RS24375 WP_393895571.1 5563139..5563816(+) (clpP) [Streptomyces sp. Pv4-95 voucher LV 740]

ATGAACAACTTCCACGGCAGCGGCCTGTACGAGGGCGCGGAGTCCGAGTTTTCCGGCCCGCGCGCCGAGTCCCGCTACAT

CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA

TCTTCCTCGGCGTGCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC

GACCGTGACATCTCGATCTACATCAACTCGCCCGGTGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT

CGTCAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCGGCCGGCACCCCCG

GCAAGCGGATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC

CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGTTCGCAGCTGGAGGACCTGCTGGCCAAGCACTCCTCCACGCCGAT

CGAGAAGATTCGGGACGATATCGAGCGTGACAAGATTCTGACCGCCGAGGAGTCCTTGGCGTACGGTCTGGTCGACCAGA

TCGTCTCGACGCGGAAGTCGTCCGTCTCCATCGGATAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	51.053	84.444	0.431
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	48.936	83.556	0.409
clpP	Streptococcus pyogenes MGAS315	46.316	84.444	0.391
clpP	Streptococcus pyogenes JRS4	46.316	84.444	0.391
clpP	Streptococcus thermophilus LMD-9	45.361	86.222	0.391
clpP	Streptococcus mutans UA159	45.361	86.222	0.391
clpP	Streptococcus thermophilus LMG 18311	45.361	86.222	0.391
clpP	Lactococcus lactis subsp. cremoris KW2	45.55	84.889	0.387
clpP	Streptococcus pneumoniae Rx1	44.56	85.778	0.382
clpP	Streptococcus pneumoniae D39	44.56	85.778	0.382
clpP	Streptococcus pneumoniae R6	44.56	85.778	0.382
clpP	Streptococcus pneumoniae TIGR4	44.56	85.778	0.382
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.503	84.889	0.378

Detailed information NTG0771386