Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QOM21_RS24370 Genome accession   NZ_CP127172
Coordinates   5562469..5563071 (+) Length   200 a.a.
NCBI ID   WP_407555782.1    Uniprot ID   -
Organism   Streptomyces sp. Pv4-95 voucher LV 740     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5557469..5568071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM21_RS24340 (QOM21_24345) - 5559011..5559205 (+) 195 WP_393895537.1 hypothetical protein -
  QOM21_RS24345 (QOM21_24350) - 5559202..5559582 (-) 381 WP_407553166.1 arsenate reductase family protein -
  QOM21_RS24350 (QOM21_24355) - 5559723..5560088 (+) 366 WP_407553167.1 hypothetical protein -
  QOM21_RS24365 (QOM21_24370) tig 5560789..5562177 (+) 1389 WP_407553168.1 trigger factor -
  QOM21_RS24370 (QOM21_24375) clpP 5562469..5563071 (+) 603 WP_407555782.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QOM21_RS24375 (QOM21_24380) clpP 5563139..5563816 (+) 678 WP_393895571.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QOM21_RS24380 (QOM21_24385) clpX 5563974..5565260 (+) 1287 WP_407553169.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QOM21_RS24385 (QOM21_24390) - 5565456..5566427 (-) 972 WP_407553170.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21157.01 Da        Isoelectric Point: 4.8204

>NTDB_id=771385 QOM21_RS24370 WP_407555782.1 5562469..5563071(+) (clpP) [Streptomyces sp. Pv4-95 voucher LV 740]
MPSAAAEPTFGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPEKDIFLYINSPGGSISAGLAIYDTMQYI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVER
ITHDSDRDRWFSADEAKEYGLIDDVMTSAAGVPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=771385 QOM21_RS24370 WP_407555782.1 5562469..5563071(+) (clpP) [Streptomyces sp. Pv4-95 voucher LV 740]
ATGCCTTCCGCCGCCGCTGAGCCGACCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTTCTTCTCCTCGCCGCGGACCCGGAGA
AGGACATCTTCCTCTACATCAACTCTCCGGGCGGCTCGATCTCGGCCGGTCTGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCGATGGGCCTCGCCGCCTCGATGGGGCAGTTCCTGCTGAGCGCCGGCACCCCGGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCGGGCCTGGCGGGTTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTGACCGCCTTCCACACCGGTCAGACCGTCGAGCGC
ATCACCCACGACTCCGACCGCGACCGCTGGTTCTCCGCCGACGAGGCCAAGGAGTACGGCCTCATCGACGATGTGATGAC
CTCCGCCGCAGGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

54.787

94

0.515
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.105

95

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

94.5

0.49
  clpP Streptococcus mutans UA159

50.785

95.5

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.785

95.5

0.485
  clpP Streptococcus thermophilus LMD-9

50.262

95.5

0.48
  clpP Streptococcus thermophilus LMG 18311

50.262

95.5

0.48
  clpP Streptococcus pyogenes MGAS315

50.265

94.5

0.475
  clpP Streptococcus pyogenes JRS4

50.265

94.5

0.475
  clpP Streptococcus pneumoniae R6

49.215

95.5

0.47
  clpP Streptococcus pneumoniae TIGR4

49.215

95.5

0.47
  clpP Streptococcus pneumoniae Rx1

49.215

95.5

0.47
  clpP Streptococcus pneumoniae D39

49.215

95.5

0.47