Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QP019_RS06900 Genome accession   NZ_CP126978
Coordinates   1383155..1383757 (-) Length   200 a.a.
NCBI ID   WP_013746785.1    Uniprot ID   A0A0A2XW54
Organism   Gallibacterium anatis strain YJ922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1378155..1388757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS06875 (QP019_06875) - 1378508..1381384 (-) 2877 WP_285095872.1 valine--tRNA ligase -
  QP019_RS06880 (QP019_06880) - 1381405..1382001 (-) 597 WP_285095873.1 zeta toxin family protein -
  QP019_RS06885 (QP019_06885) - 1381991..1382167 (-) 177 WP_285097099.1 hypothetical protein -
  QP019_RS06890 (QP019_06890) - 1382185..1382619 (-) 435 WP_264779624.1 GNAT family N-acetyltransferase -
  QP019_RS06895 (QP019_06895) - 1382619..1383056 (-) 438 WP_285095874.1 DNA polymerase III subunit chi -
  QP019_RS06900 (QP019_06900) recR 1383155..1383757 (-) 603 WP_013746785.1 recombination mediator RecR Machinery gene
  QP019_RS06905 (QP019_06905) - 1383830..1384159 (-) 330 WP_013746784.1 YbaB/EbfC family nucleoid-associated protein -
  QP019_RS06910 (QP019_06910) dnaX 1384232..1386397 (-) 2166 WP_285095875.1 DNA polymerase III subunit gamma/tau -
  QP019_RS06915 (QP019_06915) apt 1386419..1386964 (-) 546 WP_013746782.1 adenine phosphoribosyltransferase -
  QP019_RS06920 (QP019_06920) lpxM 1387073..1388023 (-) 951 WP_094933789.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22153.40 Da        Isoelectric Point: 5.2907

>NTDB_id=769729 QP019_RS06900 WP_013746785.1 1383155..1383757(-) (recR) [Gallibacterium anatis strain YJ922]
MQISPLLDELMDALRCLPGVGPKSAQRMAYYLLQRDRSGAMNLAKTLTEAMAHIGHCSQCRTFTEEEVCNICNNYRRQEN
GQLCIVEMPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLQTESFSEVILATNPTIEGDATANYIAEM
CQQYGVKVSRIAHGIPVGGELEMVDGTTLSHSFIGRRELK

Nucleotide


Download         Length: 603 bp        

>NTDB_id=769729 QP019_RS06900 WP_013746785.1 1383155..1383757(-) (recR) [Gallibacterium anatis strain YJ922]
ATGCAAATTAGCCCTTTACTTGATGAATTGATGGATGCTTTGCGTTGCCTGCCGGGGGTCGGCCCGAAATCAGCACAACG
AATGGCGTATTATTTATTACAGCGTGATCGCAGCGGTGCAATGAATTTGGCTAAAACGCTGACAGAAGCGATGGCGCATA
TCGGTCATTGCAGTCAATGTCGTACTTTTACCGAAGAAGAAGTGTGTAATATTTGCAATAACTATCGCCGTCAAGAGAAT
GGGCAGTTATGCATAGTGGAAATGCCTTCCGATATTCAGGCAATTGAACAGACAGGGCAGTTTTCAGGTCGTTATTTTGT
ATTAATGGGGCATTTATCGCCATTGGATGGTATCGGCCCGAAAGAGATTGGGCTGGATTTATTGCAGAAAAGATTGCAGA
CAGAATCTTTTTCTGAAGTGATCTTAGCGACTAATCCAACAATTGAAGGCGATGCGACGGCGAATTATATTGCAGAAATG
TGTCAACAGTATGGTGTAAAAGTGAGCCGTATTGCTCACGGCATTCCGGTTGGTGGTGAGCTGGAAATGGTGGACGGTAC
AACGTTATCACATTCGTTTATAGGCAGACGAGAATTAAAGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2XW54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.5

0.45
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.624

98.5

0.41