Detailed information NTG0769730

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP44_RS09010
• Genome accession: NZ_CP115226
• Coordinates: 1896499..1897371 (+)
• Length: 290 a.a.
• NCBI ID: WP_023092875.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F053
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1891499..1902371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP44_RS08995 (PCP44_08980)	-	1892882..1893346 (-)	465	WP_023092872.1	pilin	-
PCP44_RS09000 (PCP44_08985)	pilB	1893577..1895277 (+)	1701	WP_023092873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP44_RS09005 (PCP44_08990)	pilC	1895281..1896498 (+)	1218	WP_023092874.1	type II secretion system F family protein	Machinery gene
PCP44_RS09010 (PCP44_08995)	pilD	1896499..1897371 (+)	873	WP_023092875.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP44_RS09015 (PCP44_09000)	coaE	1897368..1897979 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP44_RS09020 (PCP44_09005)	yacG	1897976..1898176 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP44_RS09025 (PCP44_09010)	-	1898213..1898422 (-)	210	WP_003094660.1	hypothetical protein	-
PCP44_RS09030 (PCP44_09015)	-	1898528..1899217 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PCP44_RS09035 (PCP44_09020)	-	1899214..1899684 (-)	471	WP_003094664.1	hypothetical protein	-
PCP44_RS09040 (PCP44_09025)	-	1899681..1900106 (-)	426	WP_003094666.1	GNAT family N-acetyltransferase	-
PCP44_RS09045 (PCP44_09030)	-	1900239..1900868 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP44_RS09050 (PCP44_09035)	-	1900865..1901314 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PCP44_RS09055 (PCP44_09040)	-	1901340..1901510 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31861.91 Da
• Isoelectric Point: 7.7068

>NTDB_id=769730 PCP44_RS09010 WP_023092875.1 1896499..1897371(+) (pilD) [Pseudomonas aeruginosa strain F053]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVMV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=769730 PCP44_RS09010 WP_023092875.1 1896499..1897371(+) (pilD) [Pseudomonas aeruginosa strain F053]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTTACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGATGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476