Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QP020_RS00930 Genome accession   NZ_CP126977
Coordinates   195748..197571 (+) Length   607 a.a.
NCBI ID   WP_285098526.1    Uniprot ID   -
Organism   Gallibacterium anatis strain DFSO2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 190748..202571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS00910 (QP020_00910) msbA 192026..193774 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QP020_RS00915 (QP020_00915) lpxK 193795..194772 (+) 978 WP_285098522.1 tetraacyldisaccharide 4'-kinase -
  QP020_RS00920 (QP020_00920) - 194769..194966 (+) 198 WP_285098524.1 Trm112 family protein -
  QP020_RS00925 (QP020_00925) kdsB 194968..195744 (+) 777 WP_285098525.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QP020_RS00930 (QP020_00930) uvrC 195748..197571 (+) 1824 WP_285098526.1 excinuclease ABC subunit UvrC Machinery gene
  QP020_RS00935 (QP020_00935) pgsA 197647..198195 (+) 549 WP_021461080.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QP020_RS00940 (QP020_00940) fabR 198256..198873 (-) 618 WP_018346415.1 HTH-type transcriptional repressor FabR -
  QP020_RS00945 (QP020_00945) oxyR 198876..199790 (-) 915 WP_021461082.1 DNA-binding transcriptional regulator OxyR -
  QP020_RS00950 (QP020_00950) - 199856..200284 (-) 429 WP_039080904.1 DUF2251 domain-containing protein -
  QP020_RS00955 (QP020_00955) - 200296..200772 (-) 477 WP_285098529.1 GAF domain-containing protein -
  QP020_RS00960 (QP020_00960) - 200834..202003 (-) 1170 Protein_184 IS3 family transposase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69109.09 Da        Isoelectric Point: 9.3960

>NTDB_id=769659 QP020_RS00930 WP_285098526.1 195748..197571(+) (uvrC) [Gallibacterium anatis strain DFSO2]
MFDAKKFLADVSENPGVYRMYDRNNTVIYVGKAKNLKKRLSSYFRKNVNSKKTEALVASIDHIDTTITHSETEALLLEHN
FIKQYQPRYNVLLRDDKSYPYILLTHERHPRITSYRGAKKIAGEYFGPYPHSSAVRETLSLMQKLFPIRQCENSVYNNRS
RPCLQYQIKRCLAPCVAGYVTDEEYQQQVELALLFLQGKDQQVVTHLIEKMEQASNRLDFEAAARYRDQIQAVRSVMEKQ
FVSNDRLDDIDIIAIAYKSGLACVQVLFIRHGKILGNRSYFPKIPANTQIAEVIETFLGQFYLQVHQGRSIPDSIVIDHS
LAGKEMLQTLLSEQAGRQVQIQDKVKGEKNRYLQLAQTNASVALTTQLKQQGRIEERYQALQQLLHMDKIQRMECFDISH
TMGENTIASCVVFGSEGPLKSDYRRFNIEGTHGDDYAAMEQALKKRYDKDLTAEKIPDIIFIDGGKGQLNRALAVFDNLN
VSWNKHKPLLIGVAKGVDRKAGLETLLIGNSEREIHLEPDNLALHLIQHIRDESHNHAISGHRKKRQKAFIQSGLESIEG
VGAKRRQALLKYLGGLQGVRAATIDELASVPGISRSLAEKIFETLKH

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=769659 QP020_RS00930 WP_285098526.1 195748..197571(+) (uvrC) [Gallibacterium anatis strain DFSO2]
ATGTTTGATGCAAAAAAATTCCTTGCCGATGTTTCGGAAAATCCGGGTGTTTATCGGATGTATGATCGGAATAATACTGT
TATTTATGTCGGCAAGGCAAAAAATCTCAAAAAACGGCTTTCCAGTTATTTCCGTAAAAATGTTAATAGCAAAAAAACGG
AAGCACTGGTAGCTTCGATCGATCATATCGATACGACGATCACCCATTCAGAAACGGAAGCATTGCTGCTTGAACATAAT
TTCATCAAGCAGTATCAGCCTCGTTATAATGTGTTGTTACGAGATGATAAATCCTATCCCTATATTTTATTAACTCACGA
GCGTCATCCACGAATTACCTCATATCGTGGTGCAAAGAAAATCGCCGGTGAGTATTTTGGGCCTTATCCGCACTCTTCCG
CTGTGCGAGAAACCTTATCATTAATGCAGAAGTTGTTCCCGATTCGTCAGTGTGAGAACAGTGTTTATAACAACCGTTCC
CGTCCTTGCTTGCAATATCAAATTAAACGCTGTCTGGCACCTTGTGTTGCCGGATATGTAACGGATGAAGAGTATCAGCA
ACAGGTGGAGTTGGCGCTCCTGTTTTTGCAAGGTAAAGATCAGCAGGTGGTGACCCATCTGATTGAAAAAATGGAGCAGG
CGAGCAACAGATTAGATTTTGAAGCGGCGGCACGTTATCGCGATCAGATTCAGGCGGTGCGATCTGTAATGGAAAAACAG
TTTGTCAGTAATGATCGTTTGGATGACATCGATATTATCGCGATTGCGTACAAATCCGGATTGGCTTGTGTGCAAGTGTT
GTTTATTCGTCACGGAAAAATATTGGGAAATCGCAGTTATTTCCCGAAAATTCCGGCAAATACACAGATTGCTGAAGTTA
TTGAAACTTTTTTAGGGCAATTTTATTTACAGGTACATCAAGGGCGGAGTATTCCCGATTCGATTGTGATTGATCACTCT
TTAGCCGGAAAAGAGATGTTACAAACGTTATTGAGTGAACAGGCAGGACGTCAAGTTCAGATTCAAGATAAAGTAAAAGG
CGAGAAAAACCGTTATTTACAGTTAGCGCAAACTAATGCTTCGGTGGCATTAACAACGCAATTAAAACAACAAGGCAGAA
TAGAAGAGCGTTATCAAGCGTTGCAACAGTTGCTGCATATGGACAAAATCCAACGAATGGAGTGTTTCGACATTAGCCAT
ACAATGGGGGAAAATACGATTGCTTCCTGTGTTGTTTTTGGTTCGGAAGGGCCGTTAAAATCGGATTACCGCCGTTTTAA
TATTGAAGGTACACACGGTGATGATTATGCGGCGATGGAGCAGGCATTGAAGAAAAGATACGATAAAGATCTCACGGCAG
AGAAGATACCTGATATTATTTTTATTGACGGTGGTAAAGGGCAGCTCAATCGTGCTTTGGCAGTGTTTGATAATCTGAAT
GTGAGTTGGAACAAACACAAGCCGTTATTAATCGGCGTGGCGAAAGGGGTTGATCGTAAAGCCGGTTTGGAAACCTTATT
AATCGGTAACAGTGAACGGGAGATTCATTTAGAACCGGATAATTTAGCACTGCATTTAATCCAGCATATTCGAGATGAAT
CACATAATCACGCTATTTCCGGACACCGTAAAAAACGGCAGAAAGCGTTTATTCAGAGCGGTTTGGAGAGCATTGAAGGC
GTTGGTGCAAAACGACGTCAAGCACTGTTGAAATATCTTGGCGGTTTGCAGGGGGTTCGCGCTGCTACGATAGATGAATT
GGCTTCCGTACCCGGAATTTCACGTTCATTAGCTGAAAAAATCTTTGAAACACTAAAACATTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(555-606)

UvrB/uvrC motif (UVR)

(202-234)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-539)

GIY-YIG catalytic domain (GIY-YIG)

(15-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.545

99.176

0.362