Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   QP020_RS00905 Genome accession   NZ_CP126977
Coordinates   189569..191953 (+) Length   794 a.a.
NCBI ID   WP_285098520.1    Uniprot ID   -
Organism   Gallibacterium anatis strain DFSO2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184569..196953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS00885 (QP020_00885) - 185325..186560 (-) 1236 WP_285098518.1 MFS transporter -
  QP020_RS00890 (QP020_00890) folK 186660..187142 (-) 483 WP_039143291.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QP020_RS00895 (QP020_00895) pcnB 187142..188650 (-) 1509 WP_039143289.1 polynucleotide adenylyltransferase PcnB -
  QP020_RS00900 (QP020_00900) dksA 188787..189236 (-) 450 WP_026211023.1 RNA polymerase-binding protein DksA -
  QP020_RS00905 (QP020_00905) rec2 189569..191953 (+) 2385 WP_285098520.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QP020_RS00910 (QP020_00910) msbA 192026..193774 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QP020_RS00915 (QP020_00915) lpxK 193795..194772 (+) 978 WP_285098522.1 tetraacyldisaccharide 4'-kinase -
  QP020_RS00920 (QP020_00920) - 194769..194966 (+) 198 WP_285098524.1 Trm112 family protein -
  QP020_RS00925 (QP020_00925) kdsB 194968..195744 (+) 777 WP_285098525.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 91752.89 Da        Isoelectric Point: 8.7889

>NTDB_id=769658 QP020_RS00905 WP_285098520.1 189569..191953(+) (rec2) [Gallibacterium anatis strain DFSO2]
MERIAIACIVSCLAMMYLPFAWIFLTAFWGVFFTVASLLALWLIRKKNQWGGVIISIIFSCCWCLFLIQQLITQAQYVQT
LPKKQRAQIMIEKVLHQRDYQTAIALLKFSDQDENYRFYLSWQTPQPLAAGQSWLGEVTLKPLASRANFGGFQRQKWLYA
NHIVGYAVVKNAVLVADHPDLRERLLRHNLDLWQQQPQSELFLALGFGDKRFLSQETLQLFQQTGTAHLIAISGLHIGLV
MLLGVALARSVQYFLPAHRITPFLPLLFGGMCALLYSYLADFSIPTVRAIIALIFLLWLRFFRGYLNWWQCYVRCIAIFV
LLDPLILLSDSFWLSALAVLCLLIWNHLFPLSVCSVRGKKLHQFGKITYYILALIHLQIGLFLLFTPITLFFFSGFNFFN
LWINLWIVPIFSFVLIPLILFSILTFDYFHSWALCQFIAQQCVEGLKIFKTGWHPVSELENLWISFIFLGLCLLWGMFCI
RYAKYQRTKTDEHHWLPTSTLFRLEVSALVERTDFQTILKIIGMILGIMLWQLGFYYYQQYRTLWTLEMLDVGQGMSILI
RQNGKGVLYDTAASWRGGSMAELEIIPYLQRQGIELEAIIISHDDNDHSGGAEMLLRYFPNATLITSSEKTYAGKTPEPC
YQGVQWRWRDLDWQVIAPYKVEKTAKNHQSCVMLINDGKHNVLLTGDLDKTAELQYLEHFPTIDILQVAHHGSRTSTSTT
FLQKTAPKIALISAGIGNQWHFPHQDIISRLRQFQVDTLVTATVGQIRLRFTKQGNIEVETARTLLQPWFKQLL

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=769658 QP020_RS00905 WP_285098520.1 189569..191953(+) (rec2) [Gallibacterium anatis strain DFSO2]
GTGGAGCGAATTGCCATTGCTTGTATTGTCAGTTGTTTGGCGATGATGTATTTGCCGTTTGCATGGATTTTTTTGACTGC
ATTTTGGGGTGTTTTTTTCACTGTCGCTTCATTGCTTGCCCTATGGTTAATAAGAAAGAAAAATCAGTGGGGAGGTGTGA
TCATTTCAATAATATTTTCGTGTTGTTGGTGTCTGTTTTTGATACAACAACTCATCACACAAGCGCAGTATGTGCAGACA
CTCCCGAAGAAACAGCGCGCGCAGATTATGATTGAAAAAGTTTTGCATCAACGGGATTATCAAACGGCAATTGCATTATT
GAAATTTTCGGATCAAGATGAGAACTATCGTTTTTATTTGAGCTGGCAAACACCGCAACCGCTGGCTGCCGGACAATCTT
GGCTAGGAGAAGTCACGCTAAAACCATTAGCGTCAAGAGCCAATTTTGGTGGTTTTCAGCGTCAAAAATGGCTGTATGCA
AATCATATTGTTGGCTATGCTGTTGTGAAAAATGCAGTTTTGGTTGCAGATCATCCCGATTTGCGCGAGCGATTATTGCG
GCATAATTTGGATTTATGGCAACAGCAACCACAGTCGGAATTATTTCTTGCATTGGGATTTGGTGATAAGCGTTTTTTGA
GTCAGGAAACGTTACAACTGTTTCAACAAACCGGAACAGCGCATTTAATTGCGATTTCAGGCTTGCATATCGGTTTAGTA
ATGTTGTTGGGAGTGGCTTTAGCGCGTAGTGTGCAGTATTTCTTGCCGGCACATCGGATTACGCCGTTTTTGCCGCTATT
ATTCGGTGGAATGTGTGCGTTGTTATACAGTTATTTAGCCGATTTTTCGATCCCGACTGTCCGAGCCATTATTGCATTGA
TCTTCCTGTTGTGGCTAAGATTTTTTCGCGGTTATTTAAATTGGTGGCAATGTTATGTGCGTTGTATCGCGATTTTTGTG
CTATTGGATCCACTTATTCTGTTAAGTGATAGCTTTTGGCTATCCGCATTGGCGGTGTTATGTTTATTGATATGGAATCA
TCTGTTTCCATTATCTGTTTGCTCGGTGCGAGGAAAAAAACTCCATCAATTCGGTAAAATTACTTATTACATTTTGGCGC
TTATTCATCTACAAATCGGACTGTTTCTGCTATTTACACCAATTACACTCTTCTTTTTTTCCGGTTTTAACTTCTTTAAT
TTATGGATTAATTTATGGATTGTGCCGATTTTCAGTTTTGTACTCATTCCATTAATTTTGTTCTCCATTTTAACGTTTGA
TTACTTCCACAGTTGGGCGTTATGCCAGTTTATTGCACAACAATGTGTTGAGGGCTTAAAGATATTTAAAACTGGCTGGC
ATCCTGTTTCAGAGCTGGAAAATCTCTGGATAAGCTTTATTTTTCTAGGCTTGTGTTTGCTTTGGGGAATGTTTTGTATT
CGCTATGCTAAATATCAACGAACTAAAACGGATGAGCATCATTGGTTGCCGACATCAACACTATTCCGTTTAGAGGTGTC
TGCTTTAGTTGAGCGTACCGATTTTCAAACTATTTTGAAAATAATAGGAATGATTTTAGGCATAATGCTATGGCAATTAG
GCTTCTATTATTATCAACAATATCGCACTTTATGGACGCTGGAAATGTTGGATGTAGGGCAGGGGATGTCGATATTGATC
CGGCAAAATGGCAAAGGCGTTTTGTATGATACAGCCGCTTCGTGGCGCGGTGGCAGTATGGCTGAATTGGAAATTATTCC
CTATTTGCAACGGCAAGGTATTGAATTGGAAGCGATTATTATTAGTCACGATGATAATGATCACAGCGGTGGTGCTGAGA
TGTTGCTTCGTTATTTTCCGAATGCCACATTGATCACTTCATCCGAAAAAACATATGCCGGAAAAACGCCTGAACCCTGT
TATCAAGGCGTTCAATGGCGTTGGCGCGATTTAGATTGGCAAGTGATAGCGCCGTATAAAGTAGAAAAAACAGCGAAAAA
TCATCAATCTTGCGTGATGTTGATCAATGATGGCAAACATAATGTCCTGTTAACTGGTGATCTGGATAAAACGGCGGAAT
TACAGTATTTAGAACATTTCCCGACGATTGATATTTTGCAGGTGGCGCATCACGGTAGCCGTACTTCGACCAGTACCACA
TTTTTGCAAAAAACAGCACCGAAGATAGCATTAATTTCTGCCGGTATAGGCAATCAATGGCATTTTCCGCATCAGGACAT
TATTTCACGATTACGGCAATTTCAAGTTGATACGCTGGTAACGGCAACCGTAGGACAGATTCGATTACGTTTTACCAAGC
AGGGCAATATTGAAGTTGAAACGGCAAGAACATTATTACAACCTTGGTTTAAGCAGTTACTTTAA

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(27-169)

Metallo-beta-lactamase superfamily (Lactamase_B)

(551-735)

Competence protein (Competence)

(205-478)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

39.918

91.814

0.367