Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PCP41_RS25830 Genome accession   NZ_CP115208
Coordinates   5544575..5545792 (+) Length   405 a.a.
NCBI ID   WP_023092874.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F066     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5539575..5550792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP41_RS25805 (PCP41_25785) nadC 5539678..5540526 (+) 849 WP_003125200.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PCP41_RS25815 (PCP41_25795) - 5540707..5542020 (-) 1314 WP_234499631.1 O-antigen ligase family protein -
  PCP41_RS25820 (PCP41_25800) - 5542176..5542640 (-) 465 WP_023092872.1 pilin -
  PCP41_RS25825 (PCP41_25805) pilB 5542871..5544571 (+) 1701 WP_023092873.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PCP41_RS25830 (PCP41_25810) pilC 5544575..5545792 (+) 1218 WP_023092874.1 type II secretion system F family protein Machinery gene
  PCP41_RS25835 (PCP41_25815) pilD 5545793..5546665 (+) 873 WP_023119819.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PCP41_RS25840 (PCP41_25820) coaE 5546662..5547273 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  PCP41_RS25845 (PCP41_25825) yacG 5547270..5547470 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  PCP41_RS25850 (PCP41_25830) - 5547507..5547716 (-) 210 WP_003094660.1 hypothetical protein -
  PCP41_RS25855 (PCP41_25835) - 5547822..5548511 (-) 690 WP_003094662.1 energy-coupling factor ABC transporter permease -
  PCP41_RS25860 (PCP41_25840) - 5548508..5548978 (-) 471 WP_003094664.1 hypothetical protein -
  PCP41_RS25865 (PCP41_25845) - 5548975..5549400 (-) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  PCP41_RS25870 (PCP41_25850) - 5549533..5550162 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  PCP41_RS25875 (PCP41_25855) - 5550159..5550608 (+) 450 WP_023100233.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44028.83 Da        Isoelectric Point: 9.8103

>NTDB_id=769300 PCP41_RS25830 WP_023092874.1 5544575..5545792(+) (pilC) [Pseudomonas aeruginosa strain F066]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVASGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=769300 PCP41_RS25830 WP_023092874.1 5544575..5545792(+) (pilC) [Pseudomonas aeruginosa strain F066]
ATGGCGGACAAAGCGTTAAAAACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TTTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCACTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCACTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCAGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCAATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCGGCCTTCACCCAAATGG
TCATCAATATCTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTTCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCGATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baylyi ADP1

61.029

100

0.615
  pilC Acinetobacter baumannii D1279779

60.396

99.753

0.602
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

46.287

99.753

0.462
  pilG Neisseria meningitidis 44/76-A

45.771

99.259

0.454
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilC Vibrio campbellii strain DS40M4

40.898

99.012

0.405
  pilC Thermus thermophilus HB27

37.905

99.012

0.375