Detailed information NTG0769301

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP41_RS25835
• Genome accession: NZ_CP115208
• Coordinates: 5545793..5546665 (+)
• Length: 290 a.a.
• NCBI ID: WP_023119819.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F066
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5540793..5551665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP41_RS25820 (PCP41_25800)	-	5542176..5542640 (-)	465	WP_023092872.1	pilin	-
PCP41_RS25825 (PCP41_25805)	pilB	5542871..5544571 (+)	1701	WP_023092873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP41_RS25830 (PCP41_25810)	pilC	5544575..5545792 (+)	1218	WP_023092874.1	type II secretion system F family protein	Machinery gene
PCP41_RS25835 (PCP41_25815)	pilD	5545793..5546665 (+)	873	WP_023119819.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP41_RS25840 (PCP41_25820)	coaE	5546662..5547273 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP41_RS25845 (PCP41_25825)	yacG	5547270..5547470 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP41_RS25850 (PCP41_25830)	-	5547507..5547716 (-)	210	WP_003094660.1	hypothetical protein	-
PCP41_RS25855 (PCP41_25835)	-	5547822..5548511 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PCP41_RS25860 (PCP41_25840)	-	5548508..5548978 (-)	471	WP_003094664.1	hypothetical protein	-
PCP41_RS25865 (PCP41_25845)	-	5548975..5549400 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP41_RS25870 (PCP41_25850)	-	5549533..5550162 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP41_RS25875 (PCP41_25855)	-	5550159..5550608 (+)	450	WP_023100233.1	MOSC domain-containing protein	-
PCP41_RS25880 (PCP41_25860)	-	5550634..5550804 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31815.82 Da
• Isoelectric Point: 7.7068

>NTDB_id=769301 PCP41_RS25835 WP_023119819.1 5545793..5546665(+) (pilD) [Pseudomonas aeruginosa strain F066]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=769301 PCP41_RS25835 WP_023119819.1 5545793..5546665(+) (pilD) [Pseudomonas aeruginosa strain F066]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCAAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469