Detailed information NTG0769013

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PCP52_RS00920
• Genome accession: NZ_CP115199
• Coordinates: 197337..198554 (-)
• Length: 405 a.a.
• NCBI ID: WP_003107299.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F074
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 192337..203554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP52_RS00875 (PCP52_00875)	-	192521..192970 (-)	450	WP_237504982.1	MOSC domain-containing protein	-
PCP52_RS00880 (PCP52_00880)	-	192967..193596 (-)	630	WP_043103586.1	DUF1780 domain-containing protein	-
PCP52_RS00885 (PCP52_00885)	-	193729..194154 (+)	426	WP_105248386.1	GNAT family N-acetyltransferase	-
PCP52_RS00890 (PCP52_00890)	-	194151..194621 (+)	471	WP_003094664.1	hypothetical protein	-
PCP52_RS00895 (PCP52_00895)	-	194618..195307 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP52_RS00900 (PCP52_00900)	-	195413..195622 (+)	210	WP_020750398.1	hypothetical protein	-
PCP52_RS00905 (PCP52_00905)	yacG	195659..195859 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP52_RS00910 (PCP52_00910)	coaE	195856..196467 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP52_RS00915 (PCP52_00915)	pilD	196464..197336 (-)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP52_RS00920 (PCP52_00920)	pilC	197337..198554 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PCP52_RS00925 (PCP52_00925)	pilB	198558..200258 (-)	1701	WP_247248288.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP52_RS00930 (PCP52_00930)	-	200489..200953 (+)	465	WP_124089607.1	pilin	-
PCP52_RS00935 (PCP52_00935)	-	201019..202404 (+)	1386	WP_074222679.1	O-antigen ligase family protein	-
PCP52_RS00945 (PCP52_00945)	nadC	202585..203433 (-)	849	WP_023098057.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44001.86 Da
• Isoelectric Point: 9.8103

>NTDB_id=769013 PCP52_RS00920 WP_003107299.1 197337..198554(-) (pilC) [Pseudomonas aeruginosa strain F074]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=769013 PCP52_RS00920 WP_003107299.1 197337..198554(-) (pilC) [Pseudomonas aeruginosa strain F074]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TTTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCAGCCTTCACCATGATGG
TCATCAACATTTCCAACGTACTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCGATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	78.765	100	0.788
pilC	Acinetobacter baylyi ADP1	61.029	100	0.615
pilC	Acinetobacter baumannii D1279779	60.396	99.753	0.602
pilC	Legionella pneumophila strain ERS1305867	54.293	97.778	0.531
pilG	Neisseria gonorrhoeae MS11	46.04	99.753	0.459
pilG	Neisseria meningitidis 44/76-A	45.522	99.259	0.452
pilC	Vibrio cholerae strain A1552	41.481	100	0.415
pilC	Vibrio campbellii strain DS40M4	40.648	99.012	0.402
pilC	Thermus thermophilus HB27	38.155	99.012	0.378