Detailed information NTG0769012

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP52_RS00915
• Genome accession: NZ_CP115199
• Coordinates: 196464..197336 (-)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F074
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 191464..202336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP52_RS00870 (PCP52_00870)	-	192325..192495 (-)	171	WP_003094672.1	DUF3094 family protein	-
PCP52_RS00875 (PCP52_00875)	-	192521..192970 (-)	450	WP_237504982.1	MOSC domain-containing protein	-
PCP52_RS00880 (PCP52_00880)	-	192967..193596 (-)	630	WP_043103586.1	DUF1780 domain-containing protein	-
PCP52_RS00885 (PCP52_00885)	-	193729..194154 (+)	426	WP_105248386.1	GNAT family N-acetyltransferase	-
PCP52_RS00890 (PCP52_00890)	-	194151..194621 (+)	471	WP_003094664.1	hypothetical protein	-
PCP52_RS00895 (PCP52_00895)	-	194618..195307 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP52_RS00900 (PCP52_00900)	-	195413..195622 (+)	210	WP_020750398.1	hypothetical protein	-
PCP52_RS00905 (PCP52_00905)	yacG	195659..195859 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP52_RS00910 (PCP52_00910)	coaE	195856..196467 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP52_RS00915 (PCP52_00915)	pilD	196464..197336 (-)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP52_RS00920 (PCP52_00920)	pilC	197337..198554 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PCP52_RS00925 (PCP52_00925)	pilB	198558..200258 (-)	1701	WP_247248288.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP52_RS00930 (PCP52_00930)	-	200489..200953 (+)	465	WP_124089607.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=769012 PCP52_RS00915 WP_023084740.1 196464..197336(-) (pilD) [Pseudomonas aeruginosa strain F074]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=769012 PCP52_RS00915 WP_023084740.1 196464..197336(-) (pilD) [Pseudomonas aeruginosa strain F074]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472