Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   O1A01_RS14985 Genome accession   NZ_CP115153
Coordinates   2867626..2868879 (-) Length   417 a.a.
NCBI ID   WP_270064441.1    Uniprot ID   -
Organism   Sutcliffiella sp. NC1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2862626..2873879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1A01_RS14965 (O1A01_14965) spoVS 2862730..2862990 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  O1A01_RS14970 (O1A01_14970) - 2863136..2863930 (-) 795 WP_066416602.1 TIGR00282 family metallophosphoesterase -
  O1A01_RS14975 (O1A01_14975) rny 2864429..2865991 (-) 1563 WP_066419642.1 ribonuclease Y -
  O1A01_RS14980 (O1A01_14980) recA 2866355..2867395 (-) 1041 WP_066419640.1 recombinase RecA Machinery gene
  O1A01_RS14985 (O1A01_14985) cinA 2867626..2868879 (-) 1254 WP_270064441.1 competence/damage-inducible protein A Machinery gene
  O1A01_RS14990 (O1A01_14990) pgsA 2868914..2869492 (-) 579 WP_066419635.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O1A01_RS14995 (O1A01_14995) - 2869673..2870548 (-) 876 WP_270064442.1 RodZ domain-containing protein -
  O1A01_RS15000 (O1A01_15000) - 2870569..2871360 (-) 792 WP_066419631.1 DUF3388 domain-containing protein -
  O1A01_RS15005 (O1A01_15005) - 2871673..2871930 (-) 258 WP_066419630.1 DUF3243 domain-containing protein -
  O1A01_RS15010 (O1A01_15010) - 2872012..2872728 (-) 717 WP_066419628.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45487.18 Da        Isoelectric Point: 5.4833

>NTDB_id=768352 O1A01_RS14985 WP_270064441.1 2867626..2868879(-) (cinA) [Sutcliffiella sp. NC1]
MNKNAEIIAVGSELLLGQICNTNAQFLSKELAQLGINVYFHTVVGDNADRLKHAIEIAKKRSNLIIFTGGLGPTKDDLTK
ETIASILGKKLVMDEEALFSIKEYFQKTKRVMTENNKKQALVLEGSHVLPNDYGMAPGMVVEEAGYTYMLLPGPPKELQP
MFLSYGKLSLASKVDVSEHIISRVLRFFGIGESQLETEIESLIDSQTNPTIAPLAGDHEVTLRITAKHQSIDKANELLNN
TEKDILSIVGEFHYGYNDDTIFSVLFQKLKQLNVSISSAESLTGGMFGEEITQFSGASSIFDGAVVCYTNEVKEKVLGVS
SNVLSEYGAVSEQCASSLANGIKSLMNTDIGISFTGVAGPSDLEGKPVGTVFIGMSLPDGKTIVKQLNIPSTREGIRIRT
VKYGCFYLLKELMHRNA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=768352 O1A01_RS14985 WP_270064441.1 2867626..2868879(-) (cinA) [Sutcliffiella sp. NC1]
ATGAACAAAAATGCTGAAATTATCGCAGTAGGTTCAGAATTGTTATTAGGTCAAATATGTAATACAAACGCACAATTCCT
TTCAAAAGAACTAGCTCAGCTTGGTATTAACGTATATTTTCATACGGTCGTAGGAGATAATGCAGACCGATTAAAGCATG
CGATTGAAATTGCTAAAAAAAGGTCAAATCTAATCATATTTACTGGTGGTTTAGGTCCTACTAAAGATGATTTAACGAAA
GAAACAATCGCATCAATTCTAGGAAAAAAACTAGTGATGGATGAGGAAGCTTTGTTTTCAATTAAAGAATATTTTCAAAA
AACAAAAAGAGTAATGACGGAAAATAATAAAAAGCAAGCACTGGTCCTCGAAGGTTCTCACGTGCTTCCAAATGATTACG
GAATGGCACCAGGAATGGTTGTGGAAGAGGCTGGTTATACTTATATGCTATTACCTGGACCGCCCAAAGAATTGCAACCG
ATGTTTCTATCATATGGAAAACTATCATTAGCTTCGAAAGTGGATGTTAGTGAACATATTATTTCGAGAGTATTACGTTT
TTTCGGAATAGGGGAATCCCAATTAGAAACTGAAATTGAATCGTTAATTGATTCTCAAACTAATCCAACGATAGCACCAC
TTGCTGGAGATCATGAAGTAACACTTAGGATTACAGCGAAACATCAATCAATCGATAAAGCGAATGAGCTATTAAATAAT
ACGGAAAAAGATATTTTATCTATAGTTGGAGAATTTCACTACGGATATAATGACGACACCATCTTTTCTGTATTATTTCA
AAAGCTAAAACAGTTAAATGTTTCTATTAGTAGTGCTGAAAGTTTAACTGGAGGAATGTTTGGAGAAGAAATAACACAAT
TTTCTGGTGCATCTTCCATATTTGATGGGGCTGTTGTTTGTTACACAAATGAAGTAAAAGAAAAAGTATTAGGTGTATCA
AGCAATGTTTTATCAGAATATGGAGCAGTAAGTGAACAGTGCGCTAGCTCATTAGCAAACGGAATTAAATCATTAATGAA
TACGGATATCGGAATAAGCTTTACTGGAGTAGCTGGACCAAGCGATTTAGAAGGGAAACCAGTCGGAACGGTATTTATCG
GAATGTCTTTGCCAGATGGTAAAACGATTGTTAAACAGTTGAATATTCCTAGTACTAGGGAAGGTATTCGGATACGAACA
GTAAAATACGGTTGTTTTTATTTATTAAAAGAATTAATGCATAGAAATGCTTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(7-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(262-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.838

99.041

0.583
  cinA Streptococcus mitis SK321

46.905

100

0.472
  cinA Streptococcus mitis NCTC 12261

48.593

93.765

0.456
  cinA Streptococcus pneumoniae TIGR4

48.462

93.525

0.453
  cinA Streptococcus mutans UA159

44.869

100

0.451
  cinA Streptococcus pneumoniae Rx1

48.205

93.525

0.451
  cinA Streptococcus pneumoniae R6

48.205

93.525

0.451
  cinA Streptococcus pneumoniae D39

47.949

93.525

0.448
  cinA Streptococcus suis isolate S10

42.105

91.127

0.384