Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O4M77_RS13215 Genome accession   NZ_CP114606
Coordinates   2777756..2778985 (+) Length   409 a.a.
NCBI ID   WP_323713552.1    Uniprot ID   -
Organism   Acinetobacter sp. YWS30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2772756..2783985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O4M77_RS13170 (O4M77_13160) rimP 2773115..2773639 (-) 525 WP_179992192.1 ribosome maturation factor RimP -
  O4M77_RS13200 (O4M77_13190) secG 2774603..2774932 (-) 330 WP_323713551.1 preprotein translocase subunit SecG -
  O4M77_RS13205 (O4M77_13195) tpiA 2774946..2775737 (-) 792 WP_159122713.1 triose-phosphate isomerase -
  O4M77_RS13210 (O4M77_13200) pilB 2776016..2777725 (+) 1710 WP_159122714.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O4M77_RS13215 (O4M77_13205) pilC 2777756..2778985 (+) 1230 WP_323713552.1 type II secretion system F family protein Machinery gene
  O4M77_RS13220 (O4M77_13210) pilD 2778985..2779845 (+) 861 WP_180002777.1 prepilin peptidase Machinery gene
  O4M77_RS13225 (O4M77_13215) coaE 2779847..2780452 (+) 606 WP_159122717.1 dephospho-CoA kinase -
  O4M77_RS13230 (O4M77_13220) - 2780491..2781408 (-) 918 WP_323713553.1 DMT family transporter -
  O4M77_RS13235 (O4M77_13225) rlmB 2781452..2782201 (-) 750 WP_005233526.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  O4M77_RS13240 (O4M77_13230) - 2782344..2782667 (-) 324 WP_004787221.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44874.31 Da        Isoelectric Point: 9.7923

>NTDB_id=766851 O4M77_RS13215 WP_323713552.1 2777756..2778985(+) (pilC) [Acinetobacter sp. YWS30-1]
MAAVKKGQMTPIFSYEGVDRKGAKIKGELPARNMALAKVNLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENLSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVLKIKEDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=766851 O4M77_RS13215 WP_323713552.1 2777756..2778985(+) (pilC) [Acinetobacter sp. YWS30-1]
ATGGCAGCAGTAAAAAAAGGCCAAATGACACCGATCTTCAGTTATGAAGGGGTTGATCGCAAAGGCGCCAAGATCAAGGG
GGAATTGCCGGCACGAAATATGGCCTTGGCAAAAGTGAACTTGCGCAAACAAGGCATCACGATCAAAACTATTCGAGAAA
AGAAAAAAAATATTCTCGAAGGTTTGATGAAGAAAAAAGTTTCCACGCTGGATATCACCATCTTCACCCGTCAGTTAGCG
ACCATGATGAAAGCCGGGGTACCTTTAGTACAAGGCTTTGAAATTGTCGCAGAAGGTTTGGAAAATCTATCTATGCGCGA
GGTTGTGCTTGGAATTAAAGGCGAAGTTGAAGGGGGGAATACTTTTGCCGGAGCATTACGAAAATACCCACAATATTTTG
ACAACCTATTCTGTTCTTTAGTTGAGTCTGGCGAACAATCTGGTGCTCTGGAAACCATGCTGGATCGTGTCGCGATTTAT
AAAGAAAAAAGTGAGCTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCTACAGTAATTGTAGTAGCTGTGAT
CGTCACAATTATCCTGATGGTGAAAGTAGTTCCTGTATTCCAGGACTTATTCTCTTCATTCGGTGCAGACTTACCTGCAT
TTACTAAAATGGTAGTCAATATGTCCGAATGGATGCAAAAATATTGGTTCCTTTTGATTATTGGAATTGGCGTAGTGATT
ACTGCTTTCCTTGAAGCGAAAAAGCGTAGCAAAAAATTCCGTGATTTACTGGATAAGGCCGCGCTCAAAGCACCCATCTT
TGGTGATCTGGTCTATAAAGCGATCATTGCCCGTTATAGCCGCACTCTCGCCACCACTTTTGCTGCCGGTGTGCCATTAA
TTGATGCGCTTGAATCGACTGCTGGTGCAACCAATAACGTGGTCTATGAGGAGGCGGTATTAAAAATCAAGGAAGATGTT
GCGACAGGTCAACAGCTTCAATTTGCCATGCGTGTCACCGATAAATTCCCCTCTATGGCCGTACAAATGGTTGCAATTGG
TGAAGAATCAGGTGCATTGGATGCCATGCTGGATAAAGTCGCAACCCATTATGAAAATGAAGTCGACAATGCGGTTGATG
GTTTAACTTCCATGATGGAGCCCTTGATTATGGCAATTCTTGGTGTCCTTGTTGGTGGCCTTGTTATCGCAATGTACCTT
CCAATTTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.189

99.511

0.888
  pilC Acinetobacter baylyi ADP1

83.292

99.511

0.829
  pilC Pseudomonas stutzeri DSM 10701

62.312

97.311

0.606
  pilC Legionella pneumophila strain ERS1305867

53.401

97.066

0.518
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

42.402

99.756

0.423
  pilC Vibrio campbellii strain DS40M4

41.709

97.311

0.406