NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	O4M77_RS13220	Genome accession	NZ_CP114606
Coordinates	2778985..2779845 (+)	Length	286 a.a.
NCBI ID	WP_180002777.1	Uniprot ID	-
Organism	Acinetobacter sp. YWS30-1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2773985..2784845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O4M77_RS13200 (O4M77_13190)	secG	2774603..2774932 (-)	330	WP_323713551.1	preprotein translocase subunit SecG	-
O4M77_RS13205 (O4M77_13195)	tpiA	2774946..2775737 (-)	792	WP_159122713.1	triose-phosphate isomerase	-
O4M77_RS13210 (O4M77_13200)	pilB	2776016..2777725 (+)	1710	WP_159122714.1	type IV-A pilus assembly ATPase PilB	Machinery gene
O4M77_RS13215 (O4M77_13205)	pilC	2777756..2778985 (+)	1230	WP_323713552.1	type II secretion system F family protein	Machinery gene
O4M77_RS13220 (O4M77_13210)	pilD	2778985..2779845 (+)	861	WP_180002777.1	prepilin peptidase	Machinery gene
O4M77_RS13225 (O4M77_13215)	coaE	2779847..2780452 (+)	606	WP_159122717.1	dephospho-CoA kinase	-
O4M77_RS13230 (O4M77_13220)	-	2780491..2781408 (-)	918	WP_323713553.1	DMT family transporter	-
O4M77_RS13235 (O4M77_13225)	rlmB	2781452..2782201 (-)	750	WP_005233526.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
O4M77_RS13240 (O4M77_13230)	-	2782344..2782667 (-)	324	WP_004787221.1	pyrimidine/purine nucleoside phosphorylase	-
O4M77_RS13245 (O4M77_13235)	recN	2783105..2784766 (+)	1662	WP_323713554.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32110.37 Da Isoelectric Point: 7.7903

                                >NTDB_id=766852 O4M77_RS13220 WP_180002777.1 2778985..2779845(+) (pilD) [Acinetobacter sp. YWS30-1]

MQDFILYFSQNPTALYLAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP

IRWYQNIPVISWILLRGKCGNCQNPISIRYPFIELLTAACALIVVAVFGPTIQMLFGLVFTYVLIALTFIDFDTQLLPDR

YTLPLAALGLGINSYAIYTTPDSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=766852 O4M77_RS13220 WP_180002777.1 2778985..2779845(+) (pilD) [Acinetobacter sp. YWS30-1]

ATGCAAGATTTTATTTTATATTTCAGTCAAAACCCAACTGCGCTTTATCTCGCAGTTGGGCTTTTTAGTCTCTGTATTGG

TAGCTTTTTAAACGTTGTCATTTACCGTACCCCTAAAATGATGGAACAGGAATGGCGTACAGATTGCCAGCTGTTCTTGC

ATCCAGATCAGCCCATTATTGATGAAAGCAAAATTACTTTAAGCAAACCAGCTTCAACCTGCCCGAAATGTCAGACTCCT

ATTCGCTGGTATCAGAATATTCCGGTGATTAGCTGGATCTTATTACGTGGTAAATGTGGTAACTGTCAAAATCCTATCAG

TATCCGCTATCCATTTATTGAGCTTTTGACAGCTGCTTGTGCACTGATAGTGGTGGCAGTATTTGGGCCTACCATACAGA

TGCTGTTTGGTCTGGTTTTTACCTATGTCCTGATTGCCCTCACCTTTATTGATTTCGATACCCAGTTATTACCCGATCGC

TATACCCTGCCGCTGGCTGCACTCGGCCTGGGCATTAATAGTTATGCGATTTATACTACCCCTGATTCTGCCATCTGGGG

CTATATCATTGGCTTCTTATGCTTGTGGGTGGTGTACTATCTGTTTAAGCTGGTGACCGGCAAGGAAGGTATGGGCTATG

GAGATTTCAAATTACTAGCTGCCTTAGGTGCCTGGATGGGGCCTATGCTCCTACCACTCATTGTATTATTGTCATCATTG

GTGGGCGCGATTATTGGGATTATCCTGCTTAAAGTCCGTAAAGAAAATCAGCCCTTTGCCTTTGGCCCTTATATTGCCAT

TGCCGGCTGGATTGCCTTTTTATGGGGTGAGCAGATCATGAAAATCTATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	81.404	99.65	0.811
pilD	Acinetobacter nosocomialis M2	81.053	99.65	0.808
pilD	Vibrio cholerae strain A1552	55.056	93.357	0.514
pilD	Vibrio campbellii strain DS40M4	52.688	97.552	0.514
pilD	Neisseria gonorrhoeae MS11	47.619	95.455	0.455

Detailed information NTG0766852