Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N7E60_RS02325 Genome accession   NZ_CP114584
Coordinates   461653..462867 (-) Length   404 a.a.
NCBI ID   WP_269598011.1    Uniprot ID   -
Organism   Salinivibrio proteolyticus strain TGB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456653..467867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E60_RS02300 (N7E60_02300) mutT 458704..459099 (+) 396 WP_069586607.1 8-oxo-dGTP diphosphatase MutT -
  N7E60_RS02305 (N7E60_02305) yacG 459130..459336 (-) 207 WP_069586608.1 DNA gyrase inhibitor YacG -
  N7E60_RS02310 (N7E60_02310) zapD 459341..460081 (-) 741 WP_269598008.1 cell division protein ZapD -
  N7E60_RS02315 (N7E60_02315) coaE 460105..460719 (-) 615 WP_269598009.1 dephospho-CoA kinase -
  N7E60_RS02320 (N7E60_02320) pilD 460719..461588 (-) 870 WP_269598010.1 A24 family peptidase Machinery gene
  N7E60_RS02325 (N7E60_02325) pilC 461653..462867 (-) 1215 WP_269598011.1 type II secretion system F family protein Machinery gene
  N7E60_RS02330 (N7E60_02330) pilB 462877..464559 (-) 1683 WP_269598012.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N7E60_RS02335 (N7E60_02335) - 464584..464997 (-) 414 WP_269598013.1 pilin -
  N7E60_RS02340 (N7E60_02340) nadC 465248..466156 (-) 909 WP_269598015.1 carboxylating nicotinate-nucleotide diphosphorylase -
  N7E60_RS02345 (N7E60_02345) - 466319..467311 (+) 993 WP_269598017.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44829.45 Da        Isoelectric Point: 9.8847

>NTDB_id=766589 N7E60_RS02325 WP_269598011.1 461653..462867(-) (pilC) [Salinivibrio proteolyticus strain TGB10]
MAKPTLFLFHWRQAAAGGDKKGQVFAYTEQDARQQLASQSILPTRIIRRRLSSFQQRRHKAKAADITQFSRDLTTLLESG
IPIVQALNLIALNQVKAEMRLLVRHIRQQLEAGTSLSDALAQASPLFDRFYCDLVATGEQTGQLPQVFARLTLYREKQAQ
LRSKVIKAMIYPSIVISVALGVSAYLLVFVIPKFKHIFDSFGAELPWLTQQVLALSDIVSQHALTITLIMAGLAAAHQLL
QRKNATYQYYYDRWLLRLPVIGEVVSKACIAKFSRTLATTFSAGIPLLSGLQAATKSMTNAYYVHALNAVYQHTATGIPL
HQALRDSDSFPVMVTQMVMIGEESGSLDNMLNRIAQIYEAEVDNTVDNLGKIIEPLLILVLGLLIGGLVVAMYLPIFNLM
SVLG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=766589 N7E60_RS02325 WP_269598011.1 461653..462867(-) (pilC) [Salinivibrio proteolyticus strain TGB10]
ATGGCCAAACCCACGCTGTTTCTCTTTCATTGGCGCCAAGCCGCTGCAGGCGGCGACAAAAAAGGCCAGGTGTTCGCCTA
TACCGAGCAGGATGCTCGCCAACAGCTGGCGAGCCAATCGATCTTGCCCACACGCATCATTCGCCGTCGACTATCGAGCT
TTCAGCAGCGCCGTCACAAAGCCAAAGCGGCGGATATCACTCAGTTTTCCCGCGATCTCACCACTCTGCTAGAGTCTGGG
ATCCCTATCGTACAGGCCCTCAACCTCATCGCGCTCAATCAGGTCAAAGCCGAGATGCGCTTGCTGGTGCGTCATATTCG
CCAGCAACTCGAAGCGGGCACCAGTTTAAGCGATGCGTTGGCGCAAGCGAGTCCCTTGTTTGATCGCTTCTACTGCGATC
TGGTCGCAACAGGCGAGCAAACCGGGCAATTGCCGCAGGTCTTTGCCCGTTTAACCTTGTATCGTGAAAAACAGGCGCAG
CTTCGCAGTAAAGTGATTAAAGCCATGATCTATCCCAGCATAGTGATCAGCGTGGCCTTGGGAGTGAGTGCCTATCTGCT
GGTATTCGTGATCCCGAAATTTAAACATATTTTTGACTCCTTCGGCGCCGAGCTACCTTGGCTGACCCAACAAGTCCTCG
CCTTATCCGACATCGTGAGCCAACACGCATTGACCATCACACTGATAATGGCGGGCCTTGCCGCTGCCCACCAGCTACTG
CAGCGTAAAAACGCGACCTACCAATATTACTATGACCGCTGGCTACTGCGACTGCCCGTCATCGGTGAAGTGGTGAGTAA
AGCCTGTATTGCCAAATTTTCTCGTACCCTCGCCACCACCTTTAGTGCTGGTATTCCGTTACTTTCTGGCTTACAAGCGG
CAACAAAATCCATGACCAACGCCTATTATGTTCACGCGCTTAATGCAGTATATCAGCACACTGCAACGGGTATTCCACTC
CACCAAGCATTGCGTGACAGCGACAGCTTCCCTGTGATGGTGACGCAAATGGTGATGATTGGCGAAGAGTCGGGCTCACT
CGATAATATGCTCAACCGCATCGCGCAAATCTATGAAGCCGAAGTCGATAACACCGTTGACAACCTCGGTAAAATCATCG
AGCCCTTGTTAATTTTAGTGCTGGGGCTATTGATTGGCGGCTTGGTAGTGGCCATGTATTTACCGATTTTCAATCTGATG
TCCGTTCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.385

98.267

0.505
  pilC Vibrio campbellii strain DS40M4

50

99.505

0.498
  pilG Neisseria meningitidis 44/76-A

41.045

99.505

0.408
  pilG Neisseria gonorrhoeae MS11

40.796

99.505

0.406
  pilC Acinetobacter baylyi ADP1

39.844

95.05

0.379
  pilC Acinetobacter baumannii D1279779

39.74

95.297

0.379
  pilC Legionella pneumophila strain ERS1305867

38.095

98.762

0.376
  pilC Pseudomonas stutzeri DSM 10701

37.28

98.267

0.366