Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   N7E60_RS02320 Genome accession   NZ_CP114584
Coordinates   460719..461588 (-) Length   289 a.a.
NCBI ID   WP_269598010.1    Uniprot ID   -
Organism   Salinivibrio proteolyticus strain TGB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455719..466588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E60_RS02295 (N7E60_02295) secA 455847..458570 (+) 2724 WP_077455358.1 preprotein translocase subunit SecA -
  N7E60_RS02300 (N7E60_02300) mutT 458704..459099 (+) 396 WP_069586607.1 8-oxo-dGTP diphosphatase MutT -
  N7E60_RS02305 (N7E60_02305) yacG 459130..459336 (-) 207 WP_069586608.1 DNA gyrase inhibitor YacG -
  N7E60_RS02310 (N7E60_02310) zapD 459341..460081 (-) 741 WP_269598008.1 cell division protein ZapD -
  N7E60_RS02315 (N7E60_02315) coaE 460105..460719 (-) 615 WP_269598009.1 dephospho-CoA kinase -
  N7E60_RS02320 (N7E60_02320) pilD 460719..461588 (-) 870 WP_269598010.1 A24 family peptidase Machinery gene
  N7E60_RS02325 (N7E60_02325) pilC 461653..462867 (-) 1215 WP_269598011.1 type II secretion system F family protein Machinery gene
  N7E60_RS02330 (N7E60_02330) pilB 462877..464559 (-) 1683 WP_269598012.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N7E60_RS02335 (N7E60_02335) - 464584..464997 (-) 414 WP_269598013.1 pilin -
  N7E60_RS02340 (N7E60_02340) nadC 465248..466156 (-) 909 WP_269598015.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31968.26 Da        Isoelectric Point: 7.8458

>NTDB_id=766588 N7E60_RS02320 WP_269598010.1 460719..461588(-) (pilD) [Salinivibrio proteolyticus strain TGB10]
MLIFSSPLFIVLAGLFGLIIGSFLNVVIARLPIMMARRWRQECLATFPDANIEAQDGQRFDLCLPASHCPACEQTIRWYD
NIPLLSWLALKGRCRHCQHPISKRYPLVELTGAILCMLPAWLFTSPTWAIAVMAASLVLLALTLIDWETLLLPDQLTLPL
MWAGISLALIGISPVTLSESVIGAMVGYVSLWSLFWAFKLTTGKEGMGYGDFKLFAALGAWLGWQVLPLLILLASLSGAV
IGAIVLRRQQQGLQQPFAFGPFIAIAGWVCLLWGDGLLHWYLSQLLGMR

Nucleotide


Download         Length: 870 bp        

>NTDB_id=766588 N7E60_RS02320 WP_269598010.1 460719..461588(-) (pilD) [Salinivibrio proteolyticus strain TGB10]
ATGTTGATATTCTCATCGCCGTTATTCATCGTTCTTGCCGGCCTATTCGGCCTGATTATCGGTAGCTTTTTAAATGTGGT
CATCGCACGTTTGCCAATCATGATGGCGCGTCGTTGGCGCCAAGAATGCTTAGCCACCTTTCCTGATGCAAACATTGAGG
CCCAAGATGGGCAGCGCTTTGATTTGTGCCTTCCCGCGTCTCACTGTCCGGCCTGTGAGCAAACCATTCGTTGGTATGAC
AATATTCCGCTACTCAGTTGGCTGGCTTTAAAAGGCCGCTGCCGCCATTGCCAACATCCCATCAGTAAACGCTATCCATT
GGTGGAGCTGACCGGCGCGATACTTTGCATGCTCCCCGCATGGCTTTTCACCTCCCCGACATGGGCCATCGCGGTGATGG
CGGCTAGTTTAGTGTTGTTAGCCTTAACCTTGATTGATTGGGAAACCCTGCTGCTGCCCGATCAACTCACCTTACCCTTG
ATGTGGGCTGGCATCAGCCTTGCGCTAATCGGCATTAGCCCCGTCACCCTCAGTGAGAGTGTCATTGGTGCCATGGTCGG
TTATGTCAGCCTTTGGAGCCTCTTTTGGGCCTTTAAGCTCACCACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAGC
TTTTTGCCGCCTTGGGGGCGTGGCTGGGATGGCAAGTACTGCCGCTATTGATCCTGCTGGCCTCATTAAGTGGCGCCGTG
ATTGGCGCGATCGTACTCCGCCGTCAGCAGCAAGGGCTGCAGCAACCTTTCGCCTTTGGTCCTTTTATTGCGATCGCCGG
CTGGGTCTGCCTCCTGTGGGGTGATGGCCTGTTACACTGGTATCTTTCACAACTATTGGGAATGCGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-123)

Type IV leader peptidase family (Peptidase_A24)

(134-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60

96.886

0.581
  pilD Vibrio campbellii strain DS40M4

56.228

97.232

0.547
  pilD Acinetobacter baumannii D1279779

50.896

96.54

0.491
  pilD Acinetobacter nosocomialis M2

50.896

96.54

0.491
  pilD Neisseria gonorrhoeae MS11

43.158

98.616

0.426