Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1449_RS01525 Genome accession   NZ_CP114264
Coordinates   316515..317741 (-) Length   408 a.a.
NCBI ID   WP_269228986.1    Uniprot ID   A0A9E9L4V7
Organism   Acinetobacter sp. TR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311515..322741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS01500 (O1449_01500) - 312852..313178 (+) 327 WP_004659291.1 pyrimidine/purine nucleoside phosphorylase -
  O1449_RS01505 (O1449_01505) rlmB 313360..314109 (+) 750 WP_269238962.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  O1449_RS01510 (O1449_01510) - 314140..315051 (+) 912 WP_269238963.1 DMT family transporter -
  O1449_RS01515 (O1449_01515) coaE 315048..315653 (-) 606 WP_269238964.1 dephospho-CoA kinase -
  O1449_RS01520 (O1449_01520) pilD 315655..316515 (-) 861 WP_269228987.1 A24 family peptidase Machinery gene
  O1449_RS01525 (O1449_01525) pilC 316515..317741 (-) 1227 WP_269228986.1 type II secretion system F family protein Machinery gene
  O1449_RS01530 (O1449_01530) pilB 317766..319481 (-) 1716 WP_269228985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O1449_RS01535 (O1449_01535) tpiA 319826..320617 (+) 792 WP_269238965.1 triose-phosphate isomerase -
  O1449_RS01540 (O1449_01540) secG 320630..320959 (+) 330 WP_005162938.1 preprotein translocase subunit SecG -
  O1449_RS01560 (O1449_01560) rimP 321585..322109 (+) 525 WP_269228983.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44987.51 Da        Isoelectric Point: 9.8648

>NTDB_id=765287 O1449_RS01525 WP_269228986.1 316515..317741(-) (pilC) [Acinetobacter sp. TR3]
MAVKKAQMMPTFAYEGIDRKGAKIKGEVPARNMALAKVTLRKQGITIKNIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVLIVAVIVTVILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWTQKYWFILIIVIATLIA
CVLETKKRSKKFRDFLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNKFPSMAIQMVAIGEESGALDTMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVM

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=765287 O1449_RS01525 WP_269228986.1 316515..317741(-) (pilC) [Acinetobacter sp. TR3]
ATGGCAGTTAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGAATAGATCGTAAAGGGGCTAAAATCAAAGGGGA
AGTTCCAGCACGTAACATGGCTTTAGCCAAAGTCACGTTACGAAAACAAGGAATTACCATTAAAAATATTCGAGAAAAAC
GCAAAAATATTCTCGAAGGTTTAATGAAGAAAAAAGTATCAACATTAGATATTACGATTTTTACTCGTCAATTAGCAACC
ATGATGAAAGCAGGCGTACCCTTAGTACAAGGCTTTGAGATCGTCGCCGAGGGTTTAGAAAATCCCTCTATGCGTGAAGT
TGTACTAGGAATTAAAGGGGAAGTTGAAGGTGGCAATACATTTGCTGGCGCGCTAAAAAAATATCCACAACATTTTGATA
ATCTATTCTGTTCATTAGTTGAATCGGGTGAGCAATCGGGTGCATTGGAAACTATGCTAGATCGTGTTGCGATCTATAAA
GAAAAAAGCGAATTATTAAAACAAAAAATTAAAAAAGCCATGAAATATCCAATTAGTGTTCTTATTGTAGCCGTGATTGT
AACTGTGATTTTAATGGTTAAAGTCGTTCCAGTGTTTCAAGACCTATTTAGTTCCTTCGGTGCAGATCTTCCAGCATTTA
CTCAAATGGTTGTAAACATGTCCAATTGGACACAGAAATACTGGTTTATCTTAATTATAGTAATTGCAACATTAATTGCC
TGCGTCTTAGAAACAAAAAAACGTAGTAAAAAATTCAGAGACTTTTTAGATAAAATGGCACTCAAAGCACCTATTTTTGG
TGATCTAGTCTATAAAGCGATTATTGCTCGTTATAGCCGTACACTTGCAACCACTTTTGCCGCTGGTGTACCACTGATTG
ATGCTCTCGAATCTACAGCTGGTGCAACGAATAATGTTGTTTACGAAGAAGCTGTGATGAAAATTCGTGAGGATGTTGCA
ACAGGTCAACAGCTACAATTTGCGATGCGTGTGTCAAATAAATTCCCGTCCATGGCGATTCAAATGGTTGCAATTGGTGA
AGAATCTGGAGCATTGGACACGATGTTAGATAAAGTCGCAACACATTTTGAAAATGAAGTGGATAATGCAGTCGATGGCT
TAACATCAATGATGGAACCACTGATCATGGCGGTATTAGGTGTACTCGTGGGTGGTCTAGTTATCGCGATGTACCTTCCT
ATTTTCCAAATGGGATCAGTAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.755

0.892
  pilC Acinetobacter baylyi ADP1

82.353

100

0.824
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

51.613

98.775

0.51
  pilG Neisseria meningitidis 44/76-A

45.592

97.304

0.444
  pilG Neisseria gonorrhoeae MS11

45.592

97.304

0.444
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417