Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   O1449_RS01520 Genome accession   NZ_CP114264
Coordinates   315655..316515 (-) Length   286 a.a.
NCBI ID   WP_269228987.1    Uniprot ID   -
Organism   Acinetobacter sp. TR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310655..321515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS01495 (O1449_01495) recN 310851..312509 (-) 1659 WP_269238961.1 DNA repair protein RecN -
  O1449_RS01500 (O1449_01500) - 312852..313178 (+) 327 WP_004659291.1 pyrimidine/purine nucleoside phosphorylase -
  O1449_RS01505 (O1449_01505) rlmB 313360..314109 (+) 750 WP_269238962.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  O1449_RS01510 (O1449_01510) - 314140..315051 (+) 912 WP_269238963.1 DMT family transporter -
  O1449_RS01515 (O1449_01515) coaE 315048..315653 (-) 606 WP_269238964.1 dephospho-CoA kinase -
  O1449_RS01520 (O1449_01520) pilD 315655..316515 (-) 861 WP_269228987.1 A24 family peptidase Machinery gene
  O1449_RS01525 (O1449_01525) pilC 316515..317741 (-) 1227 WP_269228986.1 type II secretion system F family protein Machinery gene
  O1449_RS01530 (O1449_01530) pilB 317766..319481 (-) 1716 WP_269228985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O1449_RS01535 (O1449_01535) tpiA 319826..320617 (+) 792 WP_269238965.1 triose-phosphate isomerase -
  O1449_RS01540 (O1449_01540) secG 320630..320959 (+) 330 WP_005162938.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31913.35 Da        Isoelectric Point: 7.5618

>NTDB_id=765286 O1449_RS01520 WP_269228987.1 315655..316515(-) (pilD) [Acinetobacter sp. TR3]
MHQFLSYFIDNPTALYVAVGLLSLCIGSFLNVVIYRTPKMMEQEWHHECQMLLHPEQPIIDETKLTLSTPPSTCPKCKSA
IHWYQNIPVMSWLMLRGKCGACQNPISIRYPLIELLTMICSLIVVAIFGATVQMLFGLILTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINSFTIYTSAGSAIWGYLIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSV
VGAIIGIILIKMRGENQPFAFGPYIAIAGWIAFLWGNQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=765286 O1449_RS01520 WP_269228987.1 315655..316515(-) (pilD) [Acinetobacter sp. TR3]
ATGCATCAATTTTTATCTTACTTTATAGACAACCCAACTGCGTTATATGTCGCAGTTGGACTTTTAAGTTTATGCATTGG
TAGTTTTTTAAATGTCGTCATCTATAGAACACCAAAGATGATGGAACAAGAATGGCATCATGAATGCCAAATGTTGTTAC
ACCCAGAACAACCTATAATAGACGAAACTAAATTAACCTTAAGCACCCCACCATCTACATGTCCAAAATGTAAATCTGCT
ATTCACTGGTATCAAAATATTCCTGTAATGAGTTGGTTAATGCTTCGTGGCAAATGTGGTGCTTGCCAAAATCCAATTAG
TATTCGCTATCCACTTATTGAACTATTAACAATGATTTGCTCATTAATAGTAGTTGCTATATTTGGTGCGACCGTACAAA
TGTTATTTGGCTTAATACTCACTTGGGTCTTAATCACATTAACGTTTATTGATTTCGACACACAGCTATTACCCGATCGC
TTTACCTTACCACTTGCCGCACTAGGCTTGGGAATCAATAGTTTCACTATTTATACTTCTGCTGGTTCAGCGATTTGGGG
CTATTTGATTGGCTTTCTATGCTTATGGATTGTTTACTATATCTTTAAACTCGTCACAGGCAAGGAAGGTATGGGCTATG
GTGATTTTAAACTACTTGCAGCTTTAGGTGCTTGGATGGGACCATTGATGCTCCCCCTAATTGTGCTACTCTCTTCAGTT
GTTGGTGCAATTATTGGAATTATTTTGATAAAAATGCGTGGTGAAAACCAACCATTTGCATTTGGTCCTTATATTGCAAT
TGCTGGCTGGATTGCATTTTTATGGGGAAATCAAATTATGAAAATATATCTAGGTGGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

81.119

100

0.811
  pilD Acinetobacter nosocomialis M2

81.119

100

0.811
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

51.449

96.503

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437