Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1V13_RS06175 Genome accession   NZ_CP114201
Coordinates   1368538..1369755 (-) Length   405 a.a.
NCBI ID   WP_269198307.1    Uniprot ID   -
Organism   Delftia acidovorans strain BIM B-1761     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363538..1374755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1V13_RS06145 (O1V13_06145) - 1364351..1365307 (+) 957 WP_269198303.1 ATP-binding protein -
  O1V13_RS06150 (O1V13_06150) - 1365358..1365876 (+) 519 WP_269198304.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  O1V13_RS06155 (O1V13_06155) - 1365887..1366123 (-) 237 WP_123691054.1 DNA gyrase inhibitor YacG -
  O1V13_RS06160 (O1V13_06160) zapD 1366141..1366896 (-) 756 WP_012207290.1 cell division protein ZapD -
  O1V13_RS06165 (O1V13_06165) coaE 1366986..1367630 (-) 645 WP_269198305.1 dephospho-CoA kinase -
  O1V13_RS06170 (O1V13_06170) - 1367645..1368538 (-) 894 WP_269198306.1 prepilin peptidase -
  O1V13_RS06175 (O1V13_06175) pilC 1368538..1369755 (-) 1218 WP_269198307.1 type II secretion system F family protein Machinery gene
  O1V13_RS06180 (O1V13_06180) pilB 1369793..1371535 (-) 1743 WP_065345745.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O1V13_RS06190 (O1V13_06190) - 1371776..1372705 (-) 930 WP_034396917.1 polyprenyl synthetase family protein -
  O1V13_RS06195 (O1V13_06195) rplU 1372936..1373247 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  O1V13_RS06200 (O1V13_06200) rpmA 1373263..1373520 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44488.33 Da        Isoelectric Point: 9.3922

>NTDB_id=765011 O1V13_RS06175 WP_269198307.1 1368538..1369755(-) (pilC) [Delftia acidovorans strain BIM B-1761]
MATAASKGIKDFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRSDVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVVVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDIFVQWWWVIFGVIGGGFYFFM
QAWKRNERMQQFMDRAMLKMPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=765011 O1V13_RS06175 WP_269198307.1 1368538..1369755(-) (pilC) [Delftia acidovorans strain BIM B-1761]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGACTTTGTCTTCGAGTGGGAAGGCAAGGATCGCAACGGCAAGATCATTCG
AGGCGAAACCCGGGCCGGAGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTCCCCAGCAAGATCAAGA
AGCGCCGTACGCGCGGTGGCAAAAGAATCAAACCCAAGGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCTGGTGTCCCGCTGCTGCAGGCCTTCGACATCGTCGGGCGCGGCAACACCAACCCCAGTGTCACGCGCCTGCTGGCCGA
TATCCGCTCCGACGTGGAGACTGGCACCTCGCTGAATGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCCGGGGAAGCGGCCGGTATCCTGGAGGCCCTGCTCGATCGGCTGGCCACCTACATGGAAAAAACC
GAGGCCATCAAGTCCAAGATCAAGTCCGCCTTGATGTATCCGATCTCGGTGGTCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATCTTCGTGATTCCCGCCTTCAAGGAAGTGTTCACTTCCTTCGGCGCGGATCTGCCGGCACCGACGCTGTTCG
TGATGGGTATCAGCGACATCTTTGTTCAATGGTGGTGGGTGATCTTCGGCGTGATCGGAGGCGGCTTCTACTTCTTCATG
CAAGCCTGGAAGCGCAATGAGCGCATGCAGCAGTTCATGGATCGTGCAATGTTGAAGATGCCGGTCTTTGGCGTGCTGAT
CGAAAAGTCCTGCGTTGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCTGCAGGCGTTCCGCTGGTCGAAGCACTGG
ATTCCGTCGGCGGCGCCTCCGGGAATGCCGTCTACGCCAATGCCACCGAGAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGCCTCACGGTGGCAATGACCAATGCCAACGTCTTTCCCTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTTGGCAAGGCGGCCGATTTCTACGAGGAGGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.693

99.753

0.556
  pilG Neisseria gonorrhoeae MS11

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.251

98.272

0.494
  pilG Neisseria meningitidis 44/76-A

49.75

98.765

0.491
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.5

98.765

0.39
  pilC Thermus thermophilus HB27

37.093

98.519

0.365