Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1N17_RS03015 Genome accession   NZ_CP114183
Coordinates   612472..613695 (-) Length   407 a.a.
NCBI ID   WP_023585959.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain PH1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607472..618695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1N17_RS02975 (O1N17_02965) rpsP 607529..607777 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  O1N17_RS02980 (O1N17_02970) rimM 607806..608354 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  O1N17_RS02985 (O1N17_02975) trmD 608382..609125 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  O1N17_RS02990 (O1N17_02980) rplS 609167..609520 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  O1N17_RS02995 (O1N17_02985) yacG 609892..610086 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  O1N17_RS03000 (O1N17_02990) zapD 610155..610895 (-) 741 WP_023624252.1 cell division protein ZapD -
  O1N17_RS03005 (O1N17_02995) coaE 610923..611537 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  O1N17_RS03010 (O1N17_03000) pilD 611538..612407 (-) 870 WP_031855539.1 A24 family peptidase Machinery gene
  O1N17_RS03015 (O1N17_03005) pilC 612472..613695 (-) 1224 WP_023585959.1 type II secretion system F family protein Machinery gene
  O1N17_RS03020 (O1N17_03010) pilB 613720..615405 (-) 1686 WP_031855538.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O1N17_RS03025 (O1N17_03015) pilA 615405..615833 (-) 429 WP_009698754.1 pilin Machinery gene
  O1N17_RS03030 (O1N17_03020) nadC 616098..616985 (-) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  O1N17_RS03035 (O1N17_03025) ampD 617078..617629 (+) 552 WP_025637088.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45223.41 Da        Isoelectric Point: 10.3996

>NTDB_id=764874 O1N17_RS03015 WP_023585959.1 612472..613695(-) (pilC) [Vibrio parahaemolyticus strain PH1339]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSMRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=764874 O1N17_RS03015 WP_023585959.1 612472..613695(-) (pilC) [Vibrio parahaemolyticus strain PH1339]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGCGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTATGCGTTCTGACTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCCTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.995

100

0.86
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.5

98.28

0.418
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria meningitidis 44/76-A

39.901

99.754

0.398