Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | O1N17_RS03025 | Genome accession | NZ_CP114183 |
| Coordinates | 615405..615833 (-) | Length | 142 a.a. |
| NCBI ID | WP_009698754.1 | Uniprot ID | A0A8B3DN92 |
| Organism | Vibrio parahaemolyticus strain PH1339 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 610405..620833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O1N17_RS03005 (O1N17_02995) | coaE | 610923..611537 (-) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
| O1N17_RS03010 (O1N17_03000) | pilD | 611538..612407 (-) | 870 | WP_031855539.1 | A24 family peptidase | Machinery gene |
| O1N17_RS03015 (O1N17_03005) | pilC | 612472..613695 (-) | 1224 | WP_023585959.1 | type II secretion system F family protein | Machinery gene |
| O1N17_RS03020 (O1N17_03010) | pilB | 613720..615405 (-) | 1686 | WP_031855538.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| O1N17_RS03025 (O1N17_03015) | pilA | 615405..615833 (-) | 429 | WP_009698754.1 | pilin | Machinery gene |
| O1N17_RS03030 (O1N17_03020) | nadC | 616098..616985 (-) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| O1N17_RS03035 (O1N17_03025) | ampD | 617078..617629 (+) | 552 | WP_025637088.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| O1N17_RS03040 (O1N17_03030) | pdhR | 618035..618802 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14524.57 Da Isoelectric Point: 5.7554
>NTDB_id=764876 O1N17_RS03025 WP_009698754.1 615405..615833(-) (pilA) [Vibrio parahaemolyticus strain PH1339]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADADAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=764876 O1N17_RS03025 WP_009698754.1 615405..615833(-) (pilA) [Vibrio parahaemolyticus strain PH1339]
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAAAAAAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACGACAAATATTGATACCTTCATTGCTGATACTGGCACCTTTCCTGCTGATGCCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCGACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.951 |
100 |
0.493 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.294 |
100 |
0.38 |