Detailed information NTG0764873

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: O1N17_RS03010
• Genome accession: NZ_CP114183
• Coordinates: 611538..612407 (-)
• Length: 289 a.a.
• NCBI ID: WP_031855539.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain PH1339
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 606538..617407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O1N17_RS02975 (O1N17_02965)	rpsP	607529..607777 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
O1N17_RS02980 (O1N17_02970)	rimM	607806..608354 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
O1N17_RS02985 (O1N17_02975)	trmD	608382..609125 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
O1N17_RS02990 (O1N17_02980)	rplS	609167..609520 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
O1N17_RS02995 (O1N17_02985)	yacG	609892..610086 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
O1N17_RS03000 (O1N17_02990)	zapD	610155..610895 (-)	741	WP_023624252.1	cell division protein ZapD	-
O1N17_RS03005 (O1N17_02995)	coaE	610923..611537 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
O1N17_RS03010 (O1N17_03000)	pilD	611538..612407 (-)	870	WP_031855539.1	A24 family peptidase	Machinery gene
O1N17_RS03015 (O1N17_03005)	pilC	612472..613695 (-)	1224	WP_023585959.1	type II secretion system F family protein	Machinery gene
O1N17_RS03020 (O1N17_03010)	pilB	613720..615405 (-)	1686	WP_031855538.1	type IV-A pilus assembly ATPase PilB	Machinery gene
O1N17_RS03025 (O1N17_03015)	pilA	615405..615833 (-)	429	WP_009698754.1	pilin	Machinery gene
O1N17_RS03030 (O1N17_03020)	nadC	616098..616985 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1972

>NTDB_id=764873 O1N17_RS03010 WP_031855539.1 611538..612407(-) (pilD) [Vibrio parahaemolyticus strain PH1339]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQEAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=764873 O1N17_RS03010 WP_031855539.1 611538..612407(-) (pilD) [Vibrio parahaemolyticus strain PH1339]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGAAGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGGTGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTTACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45