Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OZ428_RS05295 Genome accession   NZ_CP114115
Coordinates   1128336..1129544 (-) Length   402 a.a.
NCBI ID   WP_269132837.1    Uniprot ID   -
Organism   Pseudomonas sp. GXZC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123336..1134544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ428_RS05255 (OZ428_05255) - 1123368..1124666 (-) 1299 WP_269132834.1 NAD(P)/FAD-dependent oxidoreductase -
  OZ428_RS05260 (OZ428_05260) - 1124727..1124900 (-) 174 WP_016976295.1 DUF3094 family protein -
  OZ428_RS05265 (OZ428_05265) - 1124955..1125584 (-) 630 WP_033903339.1 DUF1780 domain-containing protein -
  OZ428_RS05270 (OZ428_05270) - 1125688..1126377 (+) 690 WP_133074698.1 energy-coupling factor ABC transporter permease -
  OZ428_RS05275 (OZ428_05275) - 1126444..1126659 (+) 216 WP_003171680.1 hypothetical protein -
  OZ428_RS05280 (OZ428_05280) yacG 1126656..1126856 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  OZ428_RS05285 (OZ428_05285) coaE 1126853..1127476 (-) 624 WP_269132835.1 dephospho-CoA kinase -
  OZ428_RS05290 (OZ428_05290) pilD 1127473..1128339 (-) 867 WP_269132836.1 A24 family peptidase Machinery gene
  OZ428_RS05295 (OZ428_05295) pilC 1128336..1129544 (-) 1209 WP_269132837.1 type II secretion system F family protein Machinery gene
  OZ428_RS05300 (OZ428_05300) - 1129739..1130161 (+) 423 WP_330912446.1 pilin -
  OZ428_RS05305 (OZ428_05305) - 1130197..1131597 (+) 1401 WP_269132839.1 O-antigen ligase family protein -
  OZ428_RS05315 (OZ428_05315) - 1131864..1132169 (+) 306 WP_133074693.1 DUF6388 family protein -
  OZ428_RS05320 (OZ428_05320) nadC 1132226..1133074 (-) 849 WP_133074692.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43229.60 Da        Isoelectric Point: 9.8437

>NTDB_id=764427 OZ428_RS05295 WP_269132837.1 1128336..1129544(-) (pilC) [Pseudomonas sp. GXZC]
MDDALTLYAWEGINRKGRRVCGQTTGHNLAWVRAQLRQQGISPGHVRKKSPVLRGLTPSIKSTDITLFTRQLATLLKAGI
PLLQAFDVIGDGFDNRAMRELVQGLKQAIAAGSSLAEALRKQPRCFDALYCNLVAAGEQAGALETLLERVAIHREKSEQL
RTRIKKAMTYPIAVLVVASVVTGVLLIHVVPQFQNLFAGVDGTLPGFTLQVIALSEFVQKAWWFVALGILAGGMGLRHAY
NAAPAFRLWLDAGLLKAPLAGKLLTKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGSGPFKQAIEHMRHDVSTGLPLN
QSMLASGLFPPMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=764427 OZ428_RS05295 WP_269132837.1 1128336..1129544(-) (pilC) [Pseudomonas sp. GXZC]
ATGGACGACGCTTTAACGCTGTACGCCTGGGAAGGCATCAATCGCAAAGGACGCAGGGTGTGCGGGCAAACCACGGGGCA
CAATCTTGCCTGGGTCAGGGCCCAGTTGCGCCAACAGGGCATCAGCCCGGGGCATGTGCGCAAGAAATCCCCCGTTCTGC
GAGGACTCACACCGTCGATCAAATCGACGGATATCACCCTGTTCACTCGCCAACTGGCGACGCTGTTGAAGGCCGGGATT
CCCCTGCTGCAAGCTTTCGACGTCATCGGCGATGGCTTCGACAACCGCGCTATGCGCGAGTTGGTGCAGGGGCTGAAACA
AGCGATCGCCGCAGGTTCCAGCCTGGCCGAAGCCTTGCGCAAACAACCGCGCTGCTTCGATGCGCTGTATTGCAATCTGG
TGGCGGCCGGCGAGCAGGCCGGAGCGCTGGAAACCCTGCTGGAGCGTGTGGCGATCCATCGGGAAAAGAGCGAGCAGTTA
AGGACCAGGATCAAAAAAGCCATGACCTATCCGATCGCGGTGCTGGTGGTGGCCAGCGTGGTCACCGGCGTTCTGCTGAT
CCACGTCGTGCCGCAGTTCCAGAACCTGTTTGCCGGCGTCGACGGCACGCTGCCCGGTTTCACCTTGCAGGTGATCGCCT
TGTCCGAGTTTGTGCAGAAAGCCTGGTGGTTCGTAGCGCTGGGCATTCTCGCGGGCGGCATGGGGTTACGCCACGCCTAT
AACGCCGCCCCTGCTTTTCGACTCTGGCTGGATGCCGGTTTGTTGAAAGCGCCGCTGGCAGGCAAACTGCTGACAAAATC
GGCCGTGGCCCGCTACGCCCGCACACTGTCCACGACCTTTGCGGCGGGTGTCCCCTTGGTTCAGGCATTGGATTCAGTAG
CCGGCGCGGTCGGTTCAGGGCCGTTCAAACAGGCAATCGAACATATGCGACACGATGTATCCACCGGCCTGCCATTGAAT
CAATCCATGCTCGCCAGCGGCCTGTTCCCTCCCATGGCGATCCAGATGACTGCCATCGGCGAAGAGTCGGGCACACTGGA
CCGTATGCTGGAAAAGGTCGCCAATCATTACGAGGCCGATGTGGACAACCTGGTCGATAACCTCACCAGCCTGATGGAGC
CGCTAATCATGGTGGTCCTGGGCAGCATCGTCGGCGCGCTGGTCATCGCCATGTACTTGCCGGTCTTCCAGCTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.838

98.507

0.58
  pilC Acinetobacter baumannii D1279779

51.392

98.259

0.505
  pilC Acinetobacter baylyi ADP1

50.503

99.005

0.5
  pilC Legionella pneumophila strain ERS1305867

48.371

99.254

0.48
  pilC Vibrio cholerae strain A1552

41.919

98.507

0.413
  pilG Neisseria meningitidis 44/76-A

41.146

95.522

0.393
  pilG Neisseria gonorrhoeae MS11

41.361

95.025

0.393
  pilC Vibrio campbellii strain DS40M4

38.832

98.01

0.381
  pilC Thermus thermophilus HB27

36.79

100

0.371