Detailed information NTG0764426

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OZ428_RS05290
• Genome accession: NZ_CP114115
• Coordinates: 1127473..1128339 (-)
• Length: 288 a.a.
• NCBI ID: WP_269132836.1
• Uniprot ID: -
• Organism: Pseudomonas sp. GXZC
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1122473..1133339

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OZ428_RS05255 (OZ428_05255)	-	1123368..1124666 (-)	1299	WP_269132834.1	NAD(P)/FAD-dependent oxidoreductase	-
OZ428_RS05260 (OZ428_05260)	-	1124727..1124900 (-)	174	WP_016976295.1	DUF3094 family protein	-
OZ428_RS05265 (OZ428_05265)	-	1124955..1125584 (-)	630	WP_033903339.1	DUF1780 domain-containing protein	-
OZ428_RS05270 (OZ428_05270)	-	1125688..1126377 (+)	690	WP_133074698.1	energy-coupling factor ABC transporter permease	-
OZ428_RS05275 (OZ428_05275)	-	1126444..1126659 (+)	216	WP_003171680.1	hypothetical protein	-
OZ428_RS05280 (OZ428_05280)	yacG	1126656..1126856 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
OZ428_RS05285 (OZ428_05285)	coaE	1126853..1127476 (-)	624	WP_269132835.1	dephospho-CoA kinase	-
OZ428_RS05290 (OZ428_05290)	pilD	1127473..1128339 (-)	867	WP_269132836.1	A24 family peptidase	Machinery gene
OZ428_RS05295 (OZ428_05295)	pilC	1128336..1129544 (-)	1209	WP_269132837.1	type II secretion system F family protein	Machinery gene
OZ428_RS05300 (OZ428_05300)	-	1129739..1130161 (+)	423	WP_330912446.1	pilin	-
OZ428_RS05305 (OZ428_05305)	-	1130197..1131597 (+)	1401	WP_269132839.1	O-antigen ligase family protein	-
OZ428_RS05315 (OZ428_05315)	-	1131864..1132169 (+)	306	WP_133074693.1	DUF6388 family protein	-
OZ428_RS05320 (OZ428_05320)	nadC	1132226..1133074 (-)	849	WP_133074692.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31761.93 Da
• Isoelectric Point: 7.7377

>NTDB_id=764426 OZ428_RS05290 WP_269132836.1 1127473..1128339(-) (pilD) [Pseudomonas sp. GXZC]
MSLLLVEHPWAFVVMAGILGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLAADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCKGAISPRYPLTELACGLISAWVAWHFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLILMRLHKAQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=764426 OZ428_RS05290 WP_269132836.1 1127473..1128339(-) (pilD) [Pseudomonas sp. GXZC]
TTGAGCCTGTTACTGGTTGAACACCCGTGGGCCTTTGTGGTGATGGCAGGGATACTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCAAAAATGCTCGAACGGGAATGGCGCGCCCAAGCCCATGAAGTGCTCGGTCTAGCCG
CCGACCCAGCCGGGCCGACCTACAACCTGATGCACCCCAATTCCTGCTGCCCGCATTGCAACCATCCGATACGCCCGTGG
GAAAATATCCCACTGCTCAGCTACTTGTTTCTGCGAGGTCGTTGCGCCCATTGCAAAGGAGCAATCAGCCCTCGCTATCC
GCTTACTGAACTGGCGTGTGGACTGATCTCGGCCTGGGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TTGTACTGAGCTGGGGCTTGCTGGCGATGAGCCTGATTGATGCCGATCATCAATTGTTGCCGGATGTGCTGGTGATGCCG
TTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACATTGCCCGACGCACTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACTGGCAAGGACGGCATGGGCCACGGCGACTTCAAGT
TACTCGCGCTGCTCGGTGCCTGGGGCGGTTGGCAGATTCTGCCGATGACGCTGTTGATGTCGTCGTTGGTCGGTGTATTT
GTCGGCTTGATCCTGATGCGCCTGCACAAGGCCCAAGCGTCGGCGCCGATGCCATTTGGTCCGTATCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.839	96.875	0.531
pilD	Vibrio campbellii strain DS40M4	50.714	97.222	0.493
pilD	Neisseria gonorrhoeae MS11	50.741	93.75	0.476
pilD	Acinetobacter baumannii D1279779	46.099	97.917	0.451
pilD	Acinetobacter nosocomialis M2	46.099	97.917	0.451