Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   O0R52_RS09015 Genome accession   NZ_CP114066
Coordinates   1787152..1788402 (+) Length   416 a.a.
NCBI ID   WP_217827014.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1782152..1793402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS08985 (O0R52_08985) yfmH 1782244..1783530 (+) 1287 WP_199397634.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  O0R52_RS08990 (O0R52_08990) ymfI 1783583..1784311 (+) 729 WP_024121450.1 elongation factor P 5-aminopentanone reductase -
  O0R52_RS08995 (O0R52_08995) - 1784391..1784648 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  O0R52_RS09000 (O0R52_09000) - 1784778..1785569 (+) 792 WP_024121452.1 DUF3388 domain-containing protein -
  O0R52_RS09005 (O0R52_09005) rodZ 1785588..1786502 (+) 915 WP_024121453.1 cell shape determination protein RodZ -
  O0R52_RS09010 (O0R52_09010) pgsA 1786552..1787133 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O0R52_RS09015 (O0R52_09015) cinA 1787152..1788402 (+) 1251 WP_217827014.1 competence/damage-inducible protein A Machinery gene
  O0R52_RS09020 (O0R52_09020) recA 1788575..1789621 (+) 1047 WP_099042952.1 recombinase RecA Machinery gene
  O0R52_RS09025 (O0R52_09025) - 1789800..1790978 (+) 1179 WP_217827013.1 serine hydrolase domain-containing protein -
  O0R52_RS09030 (O0R52_09030) rny 1791265..1792827 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45458.79 Da        Isoelectric Point: 5.1421

>NTDB_id=764382 O0R52_RS09015 WP_217827014.1 1787152..1788402(+) (cinA) [Bacillus halotolerans strain B13]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGGFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASVLFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECAFELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=764382 O0R52_RS09015 WP_217827014.1 1787152..1788402(+) (cinA) [Bacillus halotolerans strain B13]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTTGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGTATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCAAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCGAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAGTCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCATTGGCAGCGGACGGAGAGGTGACGCTTCGCCTGACAGCAAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGGATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGTATTGTTTTCCGGCGGTGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGGAGTGCGCATTTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTAT
TTATCGGTATTTCTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCATTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.913

100

0.959
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.973

99.279

0.466
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus suis isolate S10

42.175

90.625

0.382