Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O0R52_RS09020 Genome accession   NZ_CP114066
Coordinates   1788575..1789621 (+) Length   348 a.a.
NCBI ID   WP_099042952.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783575..1794621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS08990 (O0R52_08990) ymfI 1783583..1784311 (+) 729 WP_024121450.1 elongation factor P 5-aminopentanone reductase -
  O0R52_RS08995 (O0R52_08995) - 1784391..1784648 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  O0R52_RS09000 (O0R52_09000) - 1784778..1785569 (+) 792 WP_024121452.1 DUF3388 domain-containing protein -
  O0R52_RS09005 (O0R52_09005) rodZ 1785588..1786502 (+) 915 WP_024121453.1 cell shape determination protein RodZ -
  O0R52_RS09010 (O0R52_09010) pgsA 1786552..1787133 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O0R52_RS09015 (O0R52_09015) cinA 1787152..1788402 (+) 1251 WP_217827014.1 competence/damage-inducible protein A Machinery gene
  O0R52_RS09020 (O0R52_09020) recA 1788575..1789621 (+) 1047 WP_099042952.1 recombinase RecA Machinery gene
  O0R52_RS09025 (O0R52_09025) - 1789800..1790978 (+) 1179 WP_217827013.1 serine hydrolase domain-containing protein -
  O0R52_RS09030 (O0R52_09030) rny 1791265..1792827 (+) 1563 WP_010334309.1 ribonuclease Y -
  O0R52_RS09035 (O0R52_09035) ymdB 1792889..1793683 (+) 795 WP_217827012.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  O0R52_RS09040 (O0R52_09040) spoVS 1793883..1794143 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38117.25 Da        Isoelectric Point: 4.7315

>NTDB_id=764383 O0R52_RS09020 WP_099042952.1 1788575..1789621(+) (recA) [Bacillus halotolerans strain B13]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQTEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=764383 O0R52_RS09020 WP_099042952.1 1788575..1789621(+) (recA) [Bacillus halotolerans strain B13]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAGCAGTTCGGCAAAGGTTCTATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACGGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGTTCAGGTAAAACAACTGTTGCGCTCCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCGTTTATCGATGCGGAGCACGCGCTAGACCCGGTATACGCACAAAAACTCGGTGT
CAATATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATAGCAGAAGCGTTGGTTCGAAGCG
GTGCAGTTGACATCGTTGTTGTCGACTCTGTAGCGGCGCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCA
CATGTCGGTTTGCAGGCACGTTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCTATCAACAAATCGAAAACAATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGAAACCCGGAAACGACTCCCGGCGGTCGTGCGCTGA
AATTCTACTCTTCCGTTCGTCTTGAAGTACGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTTATGGGGAATAAAACG
AGAATTAAAGTTGTGAAAAACAAGGTGGCTCCCCCGTTCCGTACAGCTGAGGTTGATATTATGTATGGAGAAGGTATCTC
AAAAGAAGGCGAAATCATTGATCTCGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGGCGTGAAAATGCCAAACAATTCTTAAAAGAAAATAAAGATATCATGCTGATGATTCAGGAGCAA
ATTCGTGAACATTACGGCTTAGATAATAACGGGGTAGTACAGCAGCAGACGGAAGAGACACAGGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.425

100

0.994
  recA Latilactobacillus sakei subsp. sakei 23K

73.021

97.989

0.716
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus mutans UA159

65.903

100

0.661
  recA Streptococcus mitis NCTC 12261

68.485

94.828

0.649
  recA Streptococcus mitis SK321

68.182

94.828

0.647
  recA Neisseria gonorrhoeae MS11

64.162

99.425

0.638
  recA Neisseria gonorrhoeae MS11

64.162

99.425

0.638
  recA Neisseria gonorrhoeae strain FA1090

64.162

99.425

0.638
  recA Streptococcus pyogenes NZ131

67.378

94.253

0.635
  recA Lactococcus lactis subsp. cremoris KW2

65.455

94.828

0.621
  recA Helicobacter pylori strain NCTC11637

62.791

98.851

0.621
  recA Helicobacter pylori 26695

62.791

98.851

0.621
  recA Ralstonia pseudosolanacearum GMI1000

64.134

94.54

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

98.276

0.606
  recA Vibrio cholerae strain A1552

61.047

98.851

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.047

98.851

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.966

0.598
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baumannii D1279779

60.947

97.126

0.592
  recA Pseudomonas stutzeri DSM 10701

63.125

91.954

0.58
  recA Acinetobacter baylyi ADP1

62.112

92.529

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

92.816

0.56