Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OZ660_RS14705 Genome accession   NZ_CP113972
Coordinates   3237607..3238818 (+) Length   403 a.a.
NCBI ID   WP_159626848.1    Uniprot ID   -
Organism   Alteromonas sp. 009811495     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3232607..3243818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ660_RS14675 (OZ660_14685) - 3232620..3233366 (-) 747 WP_226432103.1 GntR family transcriptional regulator -
  OZ660_RS14680 (OZ660_14690) ampE 3233715..3234584 (-) 870 WP_274741420.1 beta-lactamase regulator AmpE -
  OZ660_RS14685 (OZ660_14695) ampD 3234588..3235157 (-) 570 WP_274741422.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OZ660_RS14690 (OZ660_14700) - 3235290..3235808 (+) 519 WP_274741423.1 TIGR02281 family clan AA aspartic protease -
  OZ660_RS14695 (OZ660_14705) nadC 3235829..3236683 (+) 855 WP_274743463.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OZ660_RS14700 (OZ660_14710) - 3237077..3237514 (+) 438 WP_274741424.1 pilin -
  OZ660_RS14705 (OZ660_14715) pilC 3237607..3238818 (+) 1212 WP_159626848.1 type II secretion system F family protein Machinery gene
  OZ660_RS14710 (OZ660_14720) pilD 3238864..3239775 (+) 912 WP_274741425.1 A24 family peptidase Machinery gene
  OZ660_RS14715 (OZ660_14725) coaE 3239818..3240429 (+) 612 WP_274741426.1 dephospho-CoA kinase -
  OZ660_RS14720 (OZ660_14730) - 3240512..3241933 (-) 1422 WP_274741427.1 cytochrome c peroxidase -
  OZ660_RS14725 (OZ660_14735) - 3242186..3243064 (+) 879 WP_274741428.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43743.41 Da        Isoelectric Point: 9.4253

>NTDB_id=763866 OZ660_RS14705 WP_159626848.1 3237607..3238818(+) (pilC) [Alteromonas sp. 009811495]
MAKAATTFTWQGKDRHGQSRKGEISAVSISEAKNLLRRQGISANKVKKLATPLFGAGGQKITPADISVISRQIATMLAAG
VTLIQSLEMIAQGHAKQSMRKLLGEITEEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEA
LKSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLGISRFVQDYGIFIAIGIGAAGFMFMRT
YKRSQKLRDSVDRNILKIPVVGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYMRKEVAGGMPM
HVAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMG
DVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=763866 OZ660_RS14705 WP_159626848.1 3237607..3238818(+) (pilC) [Alteromonas sp. 009811495]
ATGGCAAAAGCAGCAACTACATTTACTTGGCAAGGTAAAGATCGTCACGGTCAATCTCGCAAAGGTGAAATATCCGCTGT
TTCGATTTCTGAAGCAAAGAACCTGCTTCGCCGCCAGGGTATCTCTGCCAATAAAGTTAAAAAACTCGCCACGCCTTTGT
TTGGTGCTGGTGGTCAAAAAATAACACCCGCAGACATATCTGTAATTTCTAGGCAAATTGCCACTATGTTGGCCGCCGGT
GTTACCCTTATTCAATCACTTGAGATGATAGCGCAAGGTCATGCCAAGCAAAGCATGCGAAAGTTACTGGGCGAAATAAC
GGAAGAAGTAAAGTCAGGTAACCCGTTATCTTCAGCCCTTAGAAAACACCCGCTTTACTTCGACGACTTGTATTGTGATT
TGGTGTATACCGGTGAGCAGTCTGGTGCACTTGAAACTATCTACGATAGAATAGCTACTTATAAAGAAAAAGCAGAAGCG
TTAAAGTCTAAAATCAAGAAAGCCATGTTTTACCCTATCGCGGTATTGGTCGTGGCTTTCATCGTTACCACCATACTACT
GATTTTTGTTGTTCCTCAGTTTGAAGAGATCTTTAGTAGCTTTGGTGCAGAGTTACCTGCTTTTACACAATTCGTTCTAG
GCATTTCGCGATTTGTCCAAGACTACGGCATCTTTATAGCAATCGGCATAGGTGCTGCCGGTTTTATGTTCATGCGAACC
TATAAGCGCAGCCAAAAGTTGCGCGACAGCGTTGATAGAAACATTCTTAAAATTCCGGTAGTGGGCGAAATACTTAAAAA
AGCCAGTATTGCTCGCTTCACTCGTACATTAGCCACAACCTTTGCTGCAGGTGTTCCACTTATTGGGGCGTTAGAATCTG
CTGCAGGCGCTTCAGGTAATGCCGTATATCGAGAGGCTATTTTATACATGCGAAAGGAAGTGGCTGGTGGTATGCCAATG
CATGTCGCTATGCGCGCAACACAAGTATTTCCTGATATGGTCACACAAATGATAGCTATTGGTGAAGAGTCAGGCGCAGT
CGACGAAATGCTCAGTAAAATCGCGACTATTTACGAAGCGGAAGTCGATGACATGGTAGACGGCTTAACCAGCTTACTAG
AGCCTATGATCATGGCGGTATTAGGTGTGGTTATCGGCGGTTTGATCGTTGCTATGTATCTCCCTATTTTCCAAATGGGC
GACGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.045

98.759

0.583
  pilC Acinetobacter baumannii D1279779

53.102

100

0.531
  pilC Acinetobacter baylyi ADP1

52.645

98.511

0.519
  pilC Legionella pneumophila strain ERS1305867

51.385

98.511

0.506
  pilC Vibrio cholerae strain A1552

45.844

98.511

0.452
  pilG Neisseria meningitidis 44/76-A

44.691

100

0.449
  pilG Neisseria gonorrhoeae MS11

44.444

100

0.447
  pilC Vibrio campbellii strain DS40M4

43.325

98.511

0.427
  pilC Thermus thermophilus HB27

36.409

99.504

0.362