Detailed information NTG0763867

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OZ660_RS14710
• Genome accession: NZ_CP113972
• Coordinates: 3238864..3239775 (+)
• Length: 303 a.a.
• NCBI ID: WP_274741425.1
• Uniprot ID: -
• Organism: Alteromonas sp. 009811495
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3233864..3244775

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OZ660_RS14685 (OZ660_14695)	ampD	3234588..3235157 (-)	570	WP_274741422.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
OZ660_RS14690 (OZ660_14700)	-	3235290..3235808 (+)	519	WP_274741423.1	TIGR02281 family clan AA aspartic protease	-
OZ660_RS14695 (OZ660_14705)	nadC	3235829..3236683 (+)	855	WP_274743463.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OZ660_RS14700 (OZ660_14710)	-	3237077..3237514 (+)	438	WP_274741424.1	pilin	-
OZ660_RS14705 (OZ660_14715)	pilC	3237607..3238818 (+)	1212	WP_159626848.1	type II secretion system F family protein	Machinery gene
OZ660_RS14710 (OZ660_14720)	pilD	3238864..3239775 (+)	912	WP_274741425.1	A24 family peptidase	Machinery gene
OZ660_RS14715 (OZ660_14725)	coaE	3239818..3240429 (+)	612	WP_274741426.1	dephospho-CoA kinase	-
OZ660_RS14720 (OZ660_14730)	-	3240512..3241933 (-)	1422	WP_274741427.1	cytochrome c peroxidase	-
OZ660_RS14725 (OZ660_14735)	-	3242186..3243064 (+)	879	WP_274741428.1	transporter substrate-binding domain-containing protein	-
OZ660_RS14730 (OZ660_14740)	zapD	3243293..3244045 (+)	753	WP_274741429.1	cell division protein ZapD	-
OZ660_RS14735 (OZ660_14745)	yacG	3244098..3244325 (+)	228	WP_159626843.1	DNA gyrase inhibitor YacG	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33665.84 Da
• Isoelectric Point: 7.2937

>NTDB_id=763867 OZ660_RS14710 WP_274741425.1 3238864..3239775(+) (pilD) [Alteromonas sp. 009811495]
MDVSFAQHLVTLHQVAPLFFYSLIFIVSLMVGSFLNVVIYRLPIMLERSWQREYNDYFAEQGDEQVTTAQKDSQEAPFNL
VKPDSTCPSCGHKIRAWENIPVISYLFLKGKCAKCKTGISPRYPAVELFTALVCTFAAYHFGPTPQALWAVLFTYALISL
LFIDLDKMLLPDQLTLPLLWLGLILSTHNVFVTPTEAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTG
WQGLPVIILLSSFVGAVVGIVIMIVQKQGKSLAIPFGPYLAVAGWLTLLYKTDIITAYLNMVL

Nucleotide

• Length: 912 bp

>NTDB_id=763867 OZ660_RS14710 WP_274741425.1 3238864..3239775(+) (pilD) [Alteromonas sp. 009811495]
ATGGATGTTTCATTCGCTCAGCACTTGGTTACATTACACCAGGTAGCGCCACTATTTTTCTATTCACTTATCTTTATTGT
TAGCTTGATGGTTGGCAGCTTTTTAAATGTTGTAATCTACCGGTTACCAATCATGTTGGAGCGCAGTTGGCAGCGTGAAT
ACAATGACTATTTTGCCGAACAAGGTGACGAGCAAGTCACAACGGCCCAAAAAGATAGCCAAGAAGCTCCCTTTAACCTT
GTAAAACCAGACAGCACATGTCCGTCGTGTGGACATAAAATTCGCGCTTGGGAAAACATTCCTGTCATAAGTTACCTTTT
CCTGAAAGGGAAGTGTGCGAAATGCAAAACCGGAATTTCACCACGTTATCCGGCAGTTGAGTTATTCACGGCTTTGGTGT
GCACGTTTGCTGCTTACCATTTTGGCCCCACACCACAAGCCTTATGGGCGGTCCTATTCACCTATGCACTTATATCGTTA
CTGTTTATTGATTTAGACAAAATGCTGTTGCCCGATCAACTCACGCTTCCACTGCTTTGGTTGGGTTTAATACTCAGTAC
GCACAACGTTTTTGTCACTCCAACAGAGGCAATCATTGGTGCAGCTGCAGGCTACCTTAGTTTATGGTCTGTATATTGGT
TGTTTAAACTTGTTACCGGCAAAGAAGGTATGGGCTATGGCGACTTTAAATTATTAGCCGCTTTAGGGGCTTTTACAGGC
TGGCAAGGCTTGCCCGTTATTATCTTGCTTTCGTCTTTTGTGGGTGCGGTGGTTGGCATTGTAATCATGATTGTACAGAA
ACAAGGAAAGTCTCTGGCCATTCCATTTGGCCCTTACCTCGCGGTGGCTGGATGGTTAACCTTATTGTATAAAACCGATA
TCATTACCGCTTACTTAAATATGGTGTTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (153-260)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.234	96.04	0.502
pilD	Vibrio cholerae strain A1552	52.632	94.059	0.495
pilD	Acinetobacter baumannii D1279779	48.399	92.739	0.449
pilD	Acinetobacter nosocomialis M2	48.043	92.739	0.446
pilD	Neisseria gonorrhoeae MS11	48.881	88.449	0.432