Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OZX61_RS01425 Genome accession   NZ_CP113932
Coordinates   303015..305117 (+) Length   700 a.a.
NCBI ID   WP_195771209.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298015..310117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS01405 (OZX61_01405) comM 300026..301084 (+) 1059 WP_195771213.1 pilus assembly protein PilM Machinery gene
  OZX61_RS01410 (OZX61_01410) comN 301084..301719 (+) 636 WP_195771212.1 PilN domain-containing protein Machinery gene
  OZX61_RS01415 (OZX61_01415) comO 301723..302433 (+) 711 WP_277095074.1 type 4a pilus biogenesis protein PilO Machinery gene
  OZX61_RS01420 (OZX61_01420) pilP 302433..302957 (+) 525 WP_277095075.1 pilus assembly protein PilP Machinery gene
  OZX61_RS01425 (OZX61_01425) pilQ 303015..305117 (+) 2103 WP_195771209.1 type IV pilus secretin PilQ Machinery gene
  OZX61_RS01430 (OZX61_01430) aroK 305154..305684 (+) 531 WP_195771208.1 shikimate kinase AroK -
  OZX61_RS01435 (OZX61_01435) aroB 305714..306802 (+) 1089 WP_277095076.1 3-dehydroquinate synthase -
  OZX61_RS01440 (OZX61_01440) - 306805..307533 (+) 729 WP_277095077.1 hypothetical protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75464.25 Da        Isoelectric Point: 9.2583

>NTDB_id=763610 OZX61_RS01425 WP_195771209.1 303015..305117(+) (pilQ) [Acinetobacter sp. ESL0695]
MNSISRQLLLGTAVVAIMQAAQAGVAVTNVVPMQLNQGTEVRVMFNGLPPQPKAYQVQQASQLILDFPDTANSTTQSQIP
FSNDQVSALNLSSDNGRTRLNVDLKQNSKFSTRVEGNTYILKIVPASQVNDVKPVSTVASAVQGVSNISFQRNDKGAGQI
IIDLSDPKTPVDVQQRNNKIIARFAGNKIPMYLARRLNVNDFATPVSVVDSYNDGNNGIVEIQANNSFDYMAYQAENKLT
INVSKKVDPSQRATQAPKYTGKKISLDFQDIEIRRVLQLLADFSGENIVVADNVQGSITLHLKDVPADQALALILQTKNL
DQRRTGNVIWIAATADMIKYDEEQAKLYSQSIKLAPLQTEYIQLNYAKASDIQKLISATKKSGNTDGREPTDGNDNGGGS
LLSPRGTISVDDRTNTIIVNDTANKISQIQDLLKQLDIPVKQVMVEARIVRASTDFSKSIGVKWGYTGRSGVVTDGTNTR
STGTLIGSSISNVNTLRTSNTLSNNLSVDLGSTIAGSSSIAFGILNTADSLLSLELSALQTDGLGEVLSTPKVMTGDKQE
AIIKSGAKIPYATTSANSGTTTTFQDAVLELKVTPSITPDGKVQMKLNISKDTLGLLTNAGYAIDTNTLQTNVLVNNGET
VVLGGLYENTTSNSVNKVPLLGDIPGLGNLFKNRTRSEQKRELLIFITPRIVNDTVSRNH

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=763610 OZX61_RS01425 WP_195771209.1 303015..305117(+) (pilQ) [Acinetobacter sp. ESL0695]
ATGAACTCTATCTCTCGTCAACTTCTTTTAGGTACAGCAGTAGTTGCAATCATGCAAGCTGCACAGGCTGGTGTTGCTGT
GACTAATGTTGTGCCAATGCAGTTAAATCAGGGTACTGAAGTACGTGTTATGTTTAATGGTTTGCCTCCGCAGCCAAAAG
CATATCAAGTACAACAGGCATCTCAGCTTATTTTAGATTTTCCTGATACGGCAAATTCTACAACACAAAGTCAAATTCCA
TTCTCAAACGATCAGGTAAGTGCACTAAACTTATCGTCAGACAATGGGCGTACTCGTTTAAATGTTGACTTAAAACAAAA
TAGTAAGTTTTCTACACGTGTTGAAGGGAATACTTATATTTTAAAGATTGTACCTGCATCGCAAGTAAACGATGTTAAAC
CTGTATCTACAGTAGCATCGGCTGTACAAGGTGTTTCAAATATCAGTTTCCAAAGAAATGATAAGGGTGCGGGTCAGATC
ATCATAGATCTTTCAGATCCGAAAACACCCGTAGATGTGCAGCAACGTAATAATAAGATTATTGCACGATTTGCTGGAAA
TAAAATACCAATGTATTTGGCACGTCGTTTGAACGTGAATGATTTTGCTACGCCTGTTTCTGTTGTAGATAGCTATAACG
ATGGCAATAATGGAATTGTTGAAATTCAAGCAAACAATAGTTTTGACTATATGGCTTATCAGGCTGAAAATAAGTTAACT
ATTAATGTAAGTAAAAAGGTTGATCCAAGCCAAAGAGCAACTCAAGCACCTAAATATACAGGTAAAAAGATTTCTCTAGA
TTTCCAAGATATTGAAATTCGAAGAGTTCTCCAGTTGCTTGCAGATTTCTCGGGCGAGAATATCGTTGTTGCAGATAATG
TTCAAGGAAGCATTACACTTCATTTAAAAGATGTTCCTGCTGATCAAGCACTTGCATTAATTCTTCAAACGAAAAACTTA
GATCAGCGCCGTACAGGTAATGTTATTTGGATTGCAGCAACTGCTGACATGATTAAGTATGATGAAGAGCAAGCCAAATT
ATATTCACAATCAATTAAACTTGCTCCTTTACAGACTGAATATATTCAGTTGAATTATGCAAAAGCATCAGATATTCAAA
AGCTGATTTCTGCAACTAAAAAGTCAGGAAATACAGATGGAAGAGAACCTACCGATGGTAATGATAATGGCGGTGGTTCG
CTTCTAAGTCCAAGAGGTACAATTTCTGTAGATGATCGTACAAATACAATCATTGTAAATGATACTGCCAATAAAATTTC
TCAAATCCAAGATTTATTGAAACAACTCGACATTCCTGTTAAACAGGTTATGGTTGAAGCACGTATTGTTCGTGCGTCTA
CAGATTTCTCTAAATCGATTGGTGTGAAATGGGGTTATACTGGGCGTAGTGGTGTTGTAACAGATGGAACCAATACACGT
AGTACAGGTACATTAATTGGTAGTTCAATTTCAAATGTAAATACGCTTAGAACATCAAACACTCTTTCAAATAACTTAAG
TGTTGATTTGGGCTCTACAATTGCAGGTTCTTCAAGCATTGCTTTTGGTATTTTAAACACAGCAGATTCATTACTTTCTT
TAGAATTATCGGCATTACAGACCGATGGTTTAGGAGAGGTATTGTCTACACCTAAAGTCATGACTGGTGATAAACAAGAA
GCAATTATTAAATCTGGTGCAAAAATTCCGTATGCAACTACAAGTGCCAATAGTGGAACGACGACAACATTCCAAGATGC
AGTACTTGAGTTAAAAGTCACACCAAGTATTACACCTGATGGCAAAGTTCAAATGAAGTTAAATATTTCTAAAGATACTT
TAGGTCTATTAACGAATGCAGGATATGCAATTGATACCAATACATTGCAAACGAATGTGTTAGTTAATAATGGTGAGACT
GTTGTACTTGGTGGACTTTACGAGAATACAACGTCAAATAGTGTCAACAAGGTTCCATTACTTGGAGATATTCCGGGGTT
AGGTAATTTGTTCAAGAACAGAACACGTTCAGAACAAAAAAGAGAGCTACTGATTTTCATTACACCACGAATTGTTAATG
ACACTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(538-692)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-442)

AMIN domain (AMIN)

(36-121)

Secretin and TonB N terminus short domain (STN)

(287-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

54.632

100

0.573
  pilQ Acinetobacter baumannii D1279779

54.632

100

0.573
  comQ Acinetobacter baylyi ADP1

55.402

100

0.571
  pilQ Legionella pneumophila strain ERS1305867

39.625

99.143

0.393
  pilQ Pseudomonas aeruginosa PAK

37.689

100

0.391
  pilQ Legionella pneumophila strain Lp02

39.168

99.571

0.39