Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   OZX61_RS01410 Genome accession   NZ_CP113932
Coordinates   301084..301719 (+) Length   211 a.a.
NCBI ID   WP_195771212.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296084..306719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS01395 (OZX61_01395) - 296446..297288 (+) 843 WP_277095072.1 putative RNA methyltransferase -
  OZX61_RS01400 (OZX61_01400) - 297308..299854 (-) 2547 WP_277095073.1 PBP1A family penicillin-binding protein -
  OZX61_RS01405 (OZX61_01405) comM 300026..301084 (+) 1059 WP_195771213.1 pilus assembly protein PilM Machinery gene
  OZX61_RS01410 (OZX61_01410) comN 301084..301719 (+) 636 WP_195771212.1 PilN domain-containing protein Machinery gene
  OZX61_RS01415 (OZX61_01415) comO 301723..302433 (+) 711 WP_277095074.1 type 4a pilus biogenesis protein PilO Machinery gene
  OZX61_RS01420 (OZX61_01420) pilP 302433..302957 (+) 525 WP_277095075.1 pilus assembly protein PilP Machinery gene
  OZX61_RS01425 (OZX61_01425) pilQ 303015..305117 (+) 2103 WP_195771209.1 type IV pilus secretin PilQ Machinery gene
  OZX61_RS01430 (OZX61_01430) aroK 305154..305684 (+) 531 WP_195771208.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24117.51 Da        Isoelectric Point: 6.4997

>NTDB_id=763607 OZX61_RS01410 WP_195771212.1 301084..301719(+) (comN) [Acinetobacter sp. ESL0695]
MSKINLLPWRDELREARKKAFVFMSVVAALIGVFIVAATWFFFDQRLTDQNQANQIIVDHNNQLNQKLSSLDGLQERRKE
IVDRMHLIQNLQSQRPVIVRIVDELPRVIPKNVYLTKFTRNGDSFTLEGRAESPNAVAELMRLMSASPWYRNVFMSSFLA
NDTKSNPTTPGSVVPRDEDKYGMFVVTANLGEKAKDINALTTVDEDREEGE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=763607 OZX61_RS01410 WP_195771212.1 301084..301719(+) (comN) [Acinetobacter sp. ESL0695]
ATGTCTAAAATTAACCTGTTACCTTGGCGAGATGAGCTTCGAGAAGCTCGGAAAAAAGCATTTGTCTTTATGTCAGTGGT
TGCTGCTTTAATTGGGGTATTTATCGTTGCAGCAACATGGTTCTTCTTTGATCAAAGACTCACAGATCAAAACCAAGCGA
ATCAGATCATCGTAGATCATAATAATCAGCTTAATCAGAAGTTAAGTTCTTTAGATGGTCTTCAAGAGCGAAGAAAAGAA
ATTGTAGATCGTATGCATCTGATTCAAAATCTTCAATCTCAACGTCCTGTTATTGTACGCATTGTTGATGAATTACCACG
AGTTATTCCTAAAAACGTATATTTAACTAAATTTACGAGAAATGGCGACAGCTTTACATTAGAAGGACGTGCTGAAAGTC
CAAATGCAGTTGCGGAGTTAATGCGTCTGATGTCGGCATCTCCTTGGTATCGTAATGTGTTTATGAGTTCTTTCTTAGCA
AATGATACAAAGTCAAATCCAACTACACCTGGTTCGGTTGTCCCACGTGACGAAGACAAGTATGGCATGTTCGTAGTGAC
GGCAAATCTAGGCGAGAAAGCAAAAGATATTAATGCATTAACGACAGTTGATGAAGACAGAGAAGAGGGGGAGTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(101-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

57.561

97.156

0.559
  pilN Acinetobacter baumannii D1279779

56.585

97.156

0.55