Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   OZX61_RS01415 Genome accession   NZ_CP113932
Coordinates   301723..302433 (+) Length   236 a.a.
NCBI ID   WP_277095074.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296723..307433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS01400 (OZX61_01400) - 297308..299854 (-) 2547 WP_277095073.1 PBP1A family penicillin-binding protein -
  OZX61_RS01405 (OZX61_01405) comM 300026..301084 (+) 1059 WP_195771213.1 pilus assembly protein PilM Machinery gene
  OZX61_RS01410 (OZX61_01410) comN 301084..301719 (+) 636 WP_195771212.1 PilN domain-containing protein Machinery gene
  OZX61_RS01415 (OZX61_01415) comO 301723..302433 (+) 711 WP_277095074.1 type 4a pilus biogenesis protein PilO Machinery gene
  OZX61_RS01420 (OZX61_01420) pilP 302433..302957 (+) 525 WP_277095075.1 pilus assembly protein PilP Machinery gene
  OZX61_RS01425 (OZX61_01425) pilQ 303015..305117 (+) 2103 WP_195771209.1 type IV pilus secretin PilQ Machinery gene
  OZX61_RS01430 (OZX61_01430) aroK 305154..305684 (+) 531 WP_195771208.1 shikimate kinase AroK -
  OZX61_RS01435 (OZX61_01435) aroB 305714..306802 (+) 1089 WP_277095076.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26832.29 Da        Isoelectric Point: 4.7040

>NTDB_id=763608 OZX61_RS01415 WP_277095074.1 301723..302433(+) (comO) [Acinetobacter sp. ESL0695]
MSQENDLNDVSTQPPKSKMTLKKFTQQFNSLDPNNYGSWPIIVKFTCWLFITFVICVVGYFVLVSSVIDQISTARAQEEN
LLNEYRQKESTLRNLERYEQQLKTMQDSFNEQLQQLPKESEIPGLVEDINVTGVESGLKFKNIRLDPEIRQNFFLEQPIS
IEATGDFHAFGQFASDIALLPRIVTLQDFSITAQPNSNKKSEIPELSYIVNAKTYRYLGNELSSLGSQPNSSTGAK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=763608 OZX61_RS01415 WP_277095074.1 301723..302433(+) (comO) [Acinetobacter sp. ESL0695]
ATGAGTCAAGAAAATGATTTGAATGATGTGTCAACACAACCCCCTAAGTCGAAGATGACACTTAAAAAGTTTACTCAGCA
GTTTAACTCACTCGATCCAAATAACTATGGAAGCTGGCCAATTATTGTTAAGTTTACATGCTGGCTGTTCATTACATTTG
TCATTTGCGTAGTGGGTTATTTTGTTCTTGTGAGCAGTGTTATCGATCAAATTTCGACAGCACGTGCACAAGAAGAGAAT
TTGCTGAATGAGTATCGTCAAAAAGAATCTACATTAAGAAACTTAGAGCGTTATGAGCAACAGCTCAAAACAATGCAAGA
CAGTTTTAATGAACAACTTCAACAATTACCAAAAGAGTCTGAGATTCCTGGGCTGGTTGAGGACATTAACGTTACTGGTG
TAGAGTCTGGTTTAAAGTTTAAAAATATCCGTCTTGACCCAGAAATTCGACAGAACTTTTTCTTAGAGCAACCGATTTCG
ATTGAAGCGACTGGCGATTTCCATGCATTCGGTCAGTTTGCAAGTGATATTGCTTTATTGCCACGAATTGTCACTTTACA
AGATTTTTCAATTACGGCACAGCCGAATAGCAATAAAAAATCTGAAATACCTGAGCTAAGCTATATTGTAAATGCAAAAA
CATACCGCTATTTAGGCAATGAGCTGAGTTCGTTAGGCAGTCAACCGAATTCAAGTACAGGGGCCAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

63.111

95.339

0.602
  pilO Acinetobacter baumannii D1279779

57.265

99.153

0.568