Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMW19_RS17030 Genome accession   NZ_CP125731
Coordinates   3506041..3506646 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain GYB01     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3501041..3511646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMW19_RS17010 (QMW19_17010) aes 3501078..3502037 (+) 960 WP_000801813.1 acetyl esterase -
  QMW19_RS17015 (QMW19_17015) hemH 3502034..3502996 (-) 963 WP_001250103.1 ferrochelatase -
  QMW19_RS17020 (QMW19_17020) adk 3503232..3503876 (-) 645 WP_001220233.1 adenylate kinase -
  QMW19_RS17025 (QMW19_17025) htpG 3504057..3505931 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QMW19_RS17030 (QMW19_17030) recR 3506041..3506646 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QMW19_RS17035 (QMW19_17035) ybaB 3506646..3506975 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QMW19_RS17040 (QMW19_17040) dnaX 3507028..3508959 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QMW19_RS17045 (QMW19_17045) apt 3509088..3509639 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QMW19_RS17050 (QMW19_17050) ybaN 3509792..3510169 (-) 378 WP_001188905.1 DUF454 family protein -
  QMW19_RS17055 (QMW19_17055) priC 3510239..3510766 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QMW19_RS17060 (QMW19_17060) rsmS 3510780..3510941 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=763606 QMW19_RS17030 WP_001195025.1 3506041..3506646(-) (recR) [Escherichia coli strain GYB01]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=763606 QMW19_RS17030 WP_001195025.1 3506041..3506646(-) (recR) [Escherichia coli strain GYB01]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443