Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   OVY33_RS01040 Genome accession   NZ_CP113107
Coordinates   213681..214001 (+) Length   106 a.a.
NCBI ID   WP_103357708.1    Uniprot ID   A0A2K3YTE2
Organism   Staphylococcus rostri strain PJFA-333     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208681..219001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS01010 - 209441..209644 (+) 204 WP_103357703.1 YqgQ family protein -
  OVY33_RS01015 - 209641..210624 (+) 984 WP_103357704.1 ROK family glucokinase -
  OVY33_RS01020 - 210628..210939 (+) 312 WP_103357705.1 MTH1187 family thiamine-binding protein -
  OVY33_RS01025 - 210967..211590 (+) 624 WP_309306623.1 MBL fold metallo-hydrolase -
  OVY33_RS01030 comGA 211658..212632 (+) 975 WP_103357707.1 competence type IV pilus ATPase ComGA Machinery gene
  OVY33_RS01035 comGB 212598..213665 (+) 1068 WP_240624114.1 competence type IV pilus assembly protein ComGB -
  OVY33_RS01040 comGC 213681..214001 (+) 321 WP_103357708.1 competence type IV pilus major pilin ComGC Machinery gene
  OVY33_RS01045 comGD 213958..214422 (+) 465 WP_142381177.1 competence type IV pilus minor pilin ComGD -
  OVY33_RS01050 - 214618..215100 (+) 483 WP_240624116.1 ComGF family competence protein -
  OVY33_RS01055 - 215266..215790 (+) 525 WP_103357712.1 shikimate kinase -
  OVY33_RS01060 gcvT 215954..217045 (+) 1092 WP_103357713.1 glycine cleavage system aminomethyltransferase GcvT -
  OVY33_RS01065 gcvPA 217058..218404 (+) 1347 WP_103357714.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11938.02 Da        Isoelectric Point: 9.1319

>NTDB_id=760276 OVY33_RS01040 WP_103357708.1 213681..214001(+) (comGC) [Staphylococcus rostri strain PJFA-333]
MKQLLFKLRQNKAFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQTRLVDSQIEAYTLKFNHKPNSIDDLVRE
GYIKENQKNCKSGETITIQNGEAVAS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=760276 OVY33_RS01040 WP_103357708.1 213681..214001(+) (comGC) [Staphylococcus rostri strain PJFA-333]
ATGAAACAACTTTTATTCAAATTACGTCAAAACAAAGCCTTCACATTAATTGAAATGCTACTTGTGCTACTCATCATTAG
CGTCCTACTTATTTTAATTATCCCAAACATCGCCAAACAATCTGACCATATCCAAAAGACAGGATGTGCAGCACAAACAC
GACTCGTAGATAGTCAAATTGAAGCCTACACACTCAAGTTCAACCATAAACCTAATTCGATCGATGATTTAGTGAGGGAA
GGTTATATCAAAGAGAATCAAAAGAATTGTAAGTCGGGTGAGACGATTACAATCCAAAATGGTGAAGCAGTTGCGTCATA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YTE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

71.845

97.17

0.698
  comGC Staphylococcus aureus MW2

71.845

97.17

0.698
  comGC/cglC Streptococcus mitis SK321

42.857

99.057

0.425
  comGC/cglC Streptococcus pneumoniae D39

41.905

99.057

0.415
  comGC/cglC Streptococcus pneumoniae R6

41.905

99.057

0.415
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

99.057

0.415
  comGC/cglC Streptococcus pneumoniae Rx1

41.905

99.057

0.415
  comYC Streptococcus gordonii str. Challis substr. CH1

47.674

81.132

0.387
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

83.962

0.387
  comGC Bacillus subtilis subsp. subtilis str. 168

43.956

85.849

0.377
  comYC Streptococcus mutans UA140

48.148

76.415

0.368
  comYC Streptococcus mutans UA159

48.148

76.415

0.368