Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OSC48_RS05095 Genome accession   NZ_CP112867
Coordinates   1128669..1129877 (-) Length   402 a.a.
NCBI ID   WP_266245936.1    Uniprot ID   -
Organism   Pseudomonas quebecensis isolate S1Bt7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1123669..1134877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC48_RS05060 (OSC48_05060) - 1124991..1125164 (-) 174 WP_181079635.1 DUF3094 family protein -
  OSC48_RS05065 (OSC48_05065) - 1125216..1125845 (-) 630 WP_253510420.1 DUF1780 domain-containing protein -
  OSC48_RS05070 (OSC48_05070) - 1126019..1126708 (+) 690 WP_266245934.1 energy-coupling factor ABC transporter permease -
  OSC48_RS05075 (OSC48_05075) - 1126774..1126989 (+) 216 WP_003171680.1 hypothetical protein -
  OSC48_RS05080 (OSC48_05080) yacG 1126986..1127186 (-) 201 WP_181079638.1 DNA gyrase inhibitor YacG -
  OSC48_RS05085 (OSC48_05085) coaE 1127183..1127809 (-) 627 WP_181079639.1 dephospho-CoA kinase -
  OSC48_RS05090 (OSC48_05090) pilD 1127806..1128672 (-) 867 WP_266245935.1 A24 family peptidase Machinery gene
  OSC48_RS05095 (OSC48_05095) pilC 1128669..1129877 (-) 1209 WP_266245936.1 type II secretion system F family protein Machinery gene
  OSC48_RS05100 (OSC48_05100) - 1130075..1130488 (+) 414 WP_277528140.1 pilin -
  OSC48_RS05105 (OSC48_05105) - 1130524..1131924 (+) 1401 WP_266245937.1 O-antigen ligase family protein -
  OSC48_RS05115 (OSC48_05115) - 1132194..1132499 (+) 306 WP_253510431.1 DUF6388 family protein -
  OSC48_RS05120 (OSC48_05120) nadC 1132561..1133409 (-) 849 WP_181079644.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43301.79 Da        Isoelectric Point: 10.2635

>NTDB_id=758472 OSC48_RS05095 WP_266245936.1 1128669..1129877(-) (pilC) [Pseudomonas quebecensis isolate S1Bt7]
MNNASTTYTWEGTTRKGRRVCGQSTAHSPALVKAQLRLQGIRPSRVRRKALLLPSFAVPINTADIALLTRQLATLLKAGI
ALLQALDLISEGVENRAVRELLQALKQQIAAGTSLADALGRHPRYFDELYCNLVAAGEQAGALETLLERVAVHLEKSEQL
KARIKKAMTYPIAVLAVAGVVTVVLLVQVVPQFQGLFAGVGSQLPDFTLAVIALSEFMRQAWWLVALGLGAGCMGLRRAH
RTSSRFRYWLDAGLLKMPLAGKLLQKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGSRPFKQAIEHMRRDVSTGMQLN
RAMASSGLFPGMAIQMTAIGEESGTLDLMLEKVASHYEAEVDNQVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=758472 OSC48_RS05095 WP_266245936.1 1128669..1129877(-) (pilC) [Pseudomonas quebecensis isolate S1Bt7]
ATGAACAACGCTTCGACGACTTACACCTGGGAAGGCACCACGCGCAAAGGGCGCAGGGTGTGCGGGCAAAGCACCGCGCA
CAGTCCGGCCCTGGTCAAGGCGCAACTGCGCCTGCAAGGCATTCGCCCCAGCCGTGTGCGCAGGAAAGCCCTGCTGCTGC
CAAGTTTTGCGGTGCCGATCAACACCGCCGACATCGCCCTGTTAACCCGTCAACTGGCCACATTGCTCAAGGCTGGTATT
GCCTTGCTGCAAGCCCTCGACCTGATCAGCGAAGGTGTCGAAAACCGGGCCGTGCGTGAACTGCTGCAAGCGCTGAAACA
GCAGATCGCCGCCGGCACCAGCCTGGCTGACGCATTGGGCAGGCATCCGCGGTATTTCGATGAGCTGTACTGCAACCTGG
TAGCGGCCGGCGAACAGGCCGGCGCGCTTGAAACCCTGCTGGAGCGCGTAGCGGTTCATCTGGAAAAAAGCGAGCAGCTC
AAAGCCAGGATCAAGAAAGCCATGACGTATCCCATCGCCGTACTGGCGGTGGCCGGGGTGGTTACCGTTGTGCTGCTGGT
GCAGGTGGTGCCGCAGTTCCAGGGCCTGTTCGCTGGCGTCGGCAGTCAGTTGCCGGACTTTACCCTGGCCGTCATCGCCC
TGTCGGAATTCATGCGACAAGCCTGGTGGCTCGTCGCATTGGGGCTTGGCGCGGGGTGCATGGGGCTACGCCGGGCGCAT
CGAACGTCTTCACGCTTTCGCTACTGGCTGGATGCGGGTTTGTTGAAAATGCCGCTGGCAGGCAAACTGCTGCAGAAATC
GGCCGTGGCCCGCTACGCCCGCACGCTCTCAACCACATTCGCGGCGGGGGTTCCGCTGGTGCAGGCCTTGGATTCCGTGG
CCGGCGCCGTCGGTTCCAGGCCATTCAAACAGGCAATCGAACATATGCGTCGCGATGTATCCACAGGCATGCAACTGAAC
CGCGCCATGGCCTCCAGCGGCTTGTTTCCCGGCATGGCGATCCAGATGACCGCCATCGGTGAAGAGTCCGGCACGCTGGA
CTTGATGCTGGAGAAGGTCGCCAGCCACTATGAGGCCGAGGTAGACAATCAGGTCGATAACCTGACCAGTCTGATGGAGC
CGCTGATCATGGTGGTACTGGGAGGCATTGTCGGCGCGCTGGTCATCGCCATGTACTTGCCGGTCTTCCAATTGGGGAGC
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.942

98.756

0.582
  pilC Acinetobacter baylyi ADP1

51.646

98.259

0.507
  pilC Acinetobacter baumannii D1279779

51.515

98.507

0.507
  pilC Legionella pneumophila strain ERS1305867

48.485

98.507

0.478
  pilG Neisseria gonorrhoeae MS11

40.609

98.01

0.398
  pilC Vibrio cholerae strain A1552

40

98.259

0.393
  pilG Neisseria meningitidis 44/76-A

39.848

98.01

0.391
  pilC Vibrio campbellii strain DS40M4

37.722

98.259

0.371
  pilC Thermus thermophilus HB27

37.186

99.005

0.368