Detailed information NTG0758471

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OSC48_RS05090
• Genome accession: NZ_CP112867
• Coordinates: 1127806..1128672 (-)
• Length: 288 a.a.
• NCBI ID: WP_266245935.1
• Uniprot ID: -
• Organism: Pseudomonas quebecensis isolate S1Bt7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1122806..1133672

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSC48_RS05055 (OSC48_05055)	-	1123632..1124930 (-)	1299	WP_181079634.1	NAD(P)/FAD-dependent oxidoreductase	-
OSC48_RS05060 (OSC48_05060)	-	1124991..1125164 (-)	174	WP_181079635.1	DUF3094 family protein	-
OSC48_RS05065 (OSC48_05065)	-	1125216..1125845 (-)	630	WP_253510420.1	DUF1780 domain-containing protein	-
OSC48_RS05070 (OSC48_05070)	-	1126019..1126708 (+)	690	WP_266245934.1	energy-coupling factor ABC transporter permease	-
OSC48_RS05075 (OSC48_05075)	-	1126774..1126989 (+)	216	WP_003171680.1	hypothetical protein	-
OSC48_RS05080 (OSC48_05080)	yacG	1126986..1127186 (-)	201	WP_181079638.1	DNA gyrase inhibitor YacG	-
OSC48_RS05085 (OSC48_05085)	coaE	1127183..1127809 (-)	627	WP_181079639.1	dephospho-CoA kinase	-
OSC48_RS05090 (OSC48_05090)	pilD	1127806..1128672 (-)	867	WP_266245935.1	A24 family peptidase	Machinery gene
OSC48_RS05095 (OSC48_05095)	pilC	1128669..1129877 (-)	1209	WP_266245936.1	type II secretion system F family protein	Machinery gene
OSC48_RS05100 (OSC48_05100)	-	1130075..1130488 (+)	414	WP_277528140.1	pilin	-
OSC48_RS05105 (OSC48_05105)	-	1130524..1131924 (+)	1401	WP_266245937.1	O-antigen ligase family protein	-
OSC48_RS05115 (OSC48_05115)	-	1132194..1132499 (+)	306	WP_253510431.1	DUF6388 family protein	-
OSC48_RS05120 (OSC48_05120)	nadC	1132561..1133409 (-)	849	WP_181079644.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31573.51 Da
• Isoelectric Point: 7.6858

>NTDB_id=758471 OSC48_RS05090 WP_266245935.1 1127806..1128672(-) (pilD) [Pseudomonas quebecensis isolate S1Bt7]
MSQLLSESPWLFVALTALLGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGFPAEAAGPTYNLIHPNSCCPHCEQPIRPW
NNIPLLSYLLLGGRCAHCKGTISARYPFTELACGVLSALVAWHFGFGWQAAAVMLLTWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNNFALLVPLSDAVWGAVVGYMSLWSVFWLFKLITGKDGMGHGDFKLLALLGAWGGWQIVPMTLFVASLVGVF
AGLTLMRLRKAQVSTPMPFGPYLAIAGWIASLWGGQITDFYLQSVGFQ

Nucleotide

• Length: 867 bp

>NTDB_id=758471 OSC48_RS05090 WP_266245935.1 1127806..1128672(-) (pilD) [Pseudomonas quebecensis isolate S1Bt7]
TTGAGTCAGCTGTTGAGTGAATCCCCCTGGCTGTTTGTGGCGCTGACGGCTTTGCTGGGGCTGATCGTCGGCAGCTTTCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTTGCACGGGAGTGGCGTGCCCAGGCCCACGAAGTGCTGGGTTTTCCTG
CCGAAGCAGCGGGGCCGACCTATAACCTGATACACCCCAATTCCTGCTGCCCCCATTGCGAGCAGCCGATCCGCCCCTGG
AACAATATCCCGCTGCTCAGCTACCTGCTCCTCGGGGGCCGGTGCGCCCACTGCAAAGGAACCATCAGCGCTCGTTACCC
CTTCACCGAACTCGCCTGCGGGGTGCTGTCGGCGCTGGTGGCCTGGCATTTTGGTTTTGGCTGGCAAGCCGCAGCGGTGA
TGCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGACCATCAGTTGCTGCCGGATGTGCTGGTGCTGCCG
CTTCTTTGGCTGGGTCTGATCGTCAACAATTTCGCATTGCTGGTGCCGTTGTCCGACGCGGTATGGGGCGCGGTGGTCGG
GTACATGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACAGGCAAGGACGGCATGGGTCACGGCGACTTCAAGT
TACTGGCTCTGCTTGGGGCCTGGGGTGGCTGGCAAATCGTGCCGATGACGCTATTTGTGGCGTCATTGGTCGGCGTGTTT
GCCGGGCTGACCCTGATGCGTCTGCGCAAGGCCCAGGTATCCACACCCATGCCGTTTGGACCCTATTTGGCGATTGCCGG
CTGGATTGCGTCGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.098	99.306	0.517
pilD	Neisseria gonorrhoeae MS11	50.741	93.75	0.476
pilD	Vibrio campbellii strain DS40M4	47.719	98.958	0.472
pilD	Acinetobacter baumannii D1279779	45.985	95.139	0.437
pilD	Acinetobacter nosocomialis M2	45.985	95.139	0.437