Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   OHI04_RS11380 Genome accession   NZ_CP110849
Coordinates   2253865..2254134 (-) Length   89 a.a.
NCBI ID   WP_023188581.1    Uniprot ID   -
Organism   Lactococcus lactis strain VHProbi V60     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2248865..2259134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHI04_RS11345 (OHI04_11350) - 2249623..2250432 (-) 810 WP_014570791.1 metal ABC transporter permease -
  OHI04_RS11350 (OHI04_11355) - 2250425..2251162 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  OHI04_RS11355 (OHI04_11360) - 2251339..2252181 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  OHI04_RS11360 (OHI04_11365) - 2252178..2252615 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  OHI04_RS11365 (OHI04_11370) comGG 2252697..2252981 (-) 285 WP_025017139.1 competence type IV pilus minor pilin ComGG Machinery gene
  OHI04_RS11370 (OHI04_11375) comGF 2253020..2253502 (-) 483 WP_039116460.1 competence type IV pilus minor pilin ComGF Machinery gene
  OHI04_RS11375 (OHI04_11380) comGD 2253474..2253833 (-) 360 WP_023188582.1 competence type IV pilus minor pilin ComGD Machinery gene
  OHI04_RS11380 (OHI04_11385) comGC 2253865..2254134 (-) 270 WP_023188581.1 competence type IV pilus major pilin ComGC Machinery gene
  OHI04_RS11385 (OHI04_11390) comGB 2254261..2255334 (-) 1074 WP_080756637.1 competence type IV pilus assembly protein ComGB Machinery gene
  OHI04_RS11390 (OHI04_11395) comGA 2255228..2256165 (-) 938 Protein_2213 competence type IV pilus ATPase ComGA -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10140.55 Da        Isoelectric Point: 4.2950

>NTDB_id=756636 OHI04_RS11380 WP_023188581.1 2253865..2254134(-) (comGC) [Lactococcus lactis strain VHProbi V60]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLNAGMITQKQISAYDNYYDQN
KNEERNFND

Nucleotide


Download         Length: 270 bp        

>NTDB_id=756636 OHI04_RS11380 WP_023188581.1 2253865..2254134(-) (comGC) [Lactococcus lactis strain VHProbi V60]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGAGTCTGTCAGAATTGCTCAACGCTGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAC
AAAAATGAAGAACGAAATTTTAATGACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

86.667

84.27

0.73
  comYC Streptococcus gordonii str. Challis substr. CH1

57.647

95.506

0.551
  comGC/cglC Streptococcus pneumoniae Rx1

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae D39

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae R6

55.056

100

0.551
  comGC/cglC Streptococcus pneumoniae TIGR4

55.056

100

0.551
  comYC Streptococcus suis isolate S10

58.904

82.022

0.483
  comGC/cglC Streptococcus mitis SK321

55.263

85.393

0.472
  comYC Streptococcus mutans UA140

52.055

82.022

0.427
  comYC Streptococcus mutans UA159

52.055

82.022

0.427
  comGC/cglC Streptococcus mitis NCTC 12261

57.812

71.91

0.416