Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   BBP27_RS07295 Genome accession   NZ_CP110721
Coordinates   1555298..1556539 (+) Length   413 a.a.
NCBI ID   WP_070615539.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550298..1561539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS07280 - 1551311..1552069 (+) 759 WP_188212064.1 nucleotidyltransferase domain-containing protein -
  BBP27_RS07285 - 1552084..1553145 (+) 1062 WP_188212065.1 nucleotidyltransferase domain-containing protein -
  BBP27_RS07290 pilF 1553539..1555218 (+) 1680 WP_188212066.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BBP27_RS07295 pilG 1555298..1556539 (+) 1242 WP_070615539.1 type II secretion system F family protein Machinery gene
  BBP27_RS07300 pilD 1556541..1557428 (+) 888 WP_223168952.1 A24 family peptidase Machinery gene
  BBP27_RS07305 coaE 1557428..1558048 (+) 621 WP_188212067.1 dephospho-CoA kinase -
  BBP27_RS07310 yacG 1558045..1558227 (+) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  BBP27_RS07315 glyQ 1558311..1559210 (+) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  BBP27_RS07320 lspA 1559359..1559865 (+) 507 WP_188212068.1 signal peptidase II -
  BBP27_RS07325 ispH 1559879..1560847 (+) 969 WP_049331909.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45939.04 Da        Isoelectric Point: 9.8675

>NTDB_id=756009 BBP27_RS07295 WP_070615539.1 1555298..1556539(+) (pilG) [Neisseria sp. RH3002v2g]
MAQAEQKRSLFGSRSKGKRFTFEGKNIETERLVRGEVVAKDEEEARKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPDLTQLVMNLSDLFVDYGWIMIILLI
ASAFGLYKLHEKSPTFQKRIDALILRLPIFGTIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVSRLSALMEPIIMVVLGSLIGILLIA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=756009 BBP27_RS07295 WP_070615539.1 1555298..1556539(+) (pilG) [Neisseria sp. RH3002v2g]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGTTCAAGAAGCAAAGGTAAGCGTTTTACATTTGAAGGAAAAAACAT
CGAGACCGAACGTCTTGTCCGCGGCGAAGTAGTTGCCAAAGATGAAGAAGAGGCGCGCAAAAAACTCCAGCGCAGAGGCA
TTCGTCCTTTGCGCATCAGCAAAGTCAAAACCGCACGCAAACGCCGTATTACCCAAGAAGACATCACAGTGTTTACGCGC
CAACTGGCAACAATGATGAAGGCAGGCTTGCCGCTGATGCAGGCTTTTGAAATCGTTGCGCGCGGCCACTCCAATCCGAG
CATGACCGAAATGCTGATGCAGGTTCGCTCCGATGTCGAACAAGGTAGTGCATTGGGCAAATCGTTCTCCAAATATCCAA
AATATTTCGACCGTTTCTATTGCAACCTGGTCAGCGCAGGCGAATCCGGCGGCGTACTGGAAAGCTTATTGGACAAACTG
GCTGTTTATAAAGAAAAAACCCAAGCCATTAAGAAAAAGGTTAAAACCGCGCTGACCTACCCGATTGCCATTATCGTGGT
GGCCATCGCGCTTATCTTCATCATGATGATGTTTGTACTGCCTGCCTTTAAAGAAGTTTATGCCAATATGGGTGCAGAGC
TGCCAGACCTTACCCAACTCGTCATGAACTTGTCTGATTTATTCGTCGATTACGGCTGGATTATGATCATCCTTTTGATT
GCTTCCGCCTTCGGCCTGTACAAACTCCATGAGAAATCGCCCACCTTCCAAAAGCGAATCGATGCTTTGATTTTGAGGTT
GCCTATCTTCGGTACCATCGTCCGTAAAGCGACCATTGCCCGTTGGGCGCGTACGACTTCTACCCTCTTCGCGGCCGGCG
TTCCTTTGGTGGAAGTATTAGATTCAGTTGCAGGCGCATCCGGCAATATTCTCTATGAAGAAGCCACTCAAGACATCCGC
GCCAAGGTAACCCAAGGTCTGTCGCTGACATCCAGTATGCAAAGTACTGATATGTTCCCCAACATGGTGATTCAAATGGC
GGCCATCGGCGAAGAGTCAGGCTCTTTGGATGATATGCTGAACAAAGCAGCCGAATTCTACGAAGATGAAGTAGATAACT
CCGTCTCCCGATTGTCTGCCTTGATGGAACCTATCATCATGGTGGTATTGGGTTCGCTCATCGGTATTTTGCTGATTGCC
ATGTATCTGCCGCTGTTTAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

72.525

97.821

0.709
  pilG Neisseria meningitidis 44/76-A

71.535

97.821

0.7
  pilC Acinetobacter baumannii D1279779

46.985

96.368

0.453
  pilC Acinetobacter baylyi ADP1

46.482

96.368

0.448
  pilC Pseudomonas stutzeri DSM 10701

46

96.852

0.446
  pilC Legionella pneumophila strain ERS1305867

46.096

96.126

0.443
  pilC Vibrio cholerae strain A1552

39

96.852

0.378
  pilC Thermus thermophilus HB27

38.619

94.673

0.366