Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BBP27_RS07300 Genome accession   NZ_CP110721
Coordinates   1556541..1557428 (+) Length   295 a.a.
NCBI ID   WP_223168952.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551541..1562428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS07285 - 1552084..1553145 (+) 1062 WP_188212065.1 nucleotidyltransferase domain-containing protein -
  BBP27_RS07290 pilF 1553539..1555218 (+) 1680 WP_188212066.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BBP27_RS07295 pilG 1555298..1556539 (+) 1242 WP_070615539.1 type II secretion system F family protein Machinery gene
  BBP27_RS07300 pilD 1556541..1557428 (+) 888 WP_223168952.1 A24 family peptidase Machinery gene
  BBP27_RS07305 coaE 1557428..1558048 (+) 621 WP_188212067.1 dephospho-CoA kinase -
  BBP27_RS07310 yacG 1558045..1558227 (+) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  BBP27_RS07315 glyQ 1558311..1559210 (+) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  BBP27_RS07320 lspA 1559359..1559865 (+) 507 WP_188212068.1 signal peptidase II -
  BBP27_RS07325 ispH 1559879..1560847 (+) 969 WP_049331909.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BBP27_RS07330 ftsZ 1560969..1562168 (-) 1200 WP_003748303.1 cell division protein FtsZ -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32394.62 Da        Isoelectric Point: 8.3206

>NTDB_id=756010 BBP27_RS07300 WP_223168952.1 1556541..1557428(+) (pilD) [Neisseria sp. RH3002v2g]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELADEEKQPFNLRKPDSRCPK
CKSPIRIWQNIPILSYVLLGGKCHACKTHISIRYPLIELLTGVLFGIVAWQYGWSWATIGGFILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLIQSGFR

Nucleotide


Download         Length: 888 bp        

>NTDB_id=756010 BBP27_RS07300 WP_223168952.1 1556541..1557428(+) (pilD) [Neisseria sp. RH3002v2g]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCACCATTCGCGATTCCTTTAGCCGTTATTTTGGG
ATTACTGATTGGCAGTTTTCTAAACGTTGTCATTTATCGCACGCCGATAATGATGGAACGCGAATGGACACAATTTTCTA
AAGAGCATTTGGGCATCGAATTGGCAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACGCTGCCCAAAA
TGCAAAAGTCCGATCAGAATTTGGCAAAATATACCCATCCTCAGCTATGTTTTACTGGGCGGGAAATGCCACGCCTGCAA
AACTCATATCAGCATACGCTATCCGTTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCGACTATTGGCGGATTCATTCTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCTGATACGCAATAT
TTGCCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAACGATACATTCGTACCCCTGCATTC
AGCCGTTTGGGGTGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCTGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGATTTCAAACTTTTGGCCGCACTCGGCGCATGGCTGGGCGTAGGGATATTGCCTGTTCTGATCTTC
ATGGCTGCCTTAGTCGGGCTGGTGGGCGCGCTCATCGCCCGTGTCGGTAAAGGTCAATATTTTGCTTTTGGTCCCAGCCT
CGCTGTAGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCATACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)

Type IV leader peptidase family (Peptidase_A24)

(143-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

71.025

95.932

0.681
  pilD Vibrio campbellii strain DS40M4

46.154

92.542

0.427
  pilD Vibrio cholerae strain A1552

47.308

88.136

0.417
  pilD Acinetobacter baumannii D1279779

47.012

85.085

0.4
  pilD Acinetobacter nosocomialis M2

47.012

85.085

0.4