Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OPR71_RS02890 Genome accession   NZ_CP110670
Coordinates   598219..599442 (-) Length   407 a.a.
NCBI ID   WP_017820393.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain AUSMDU00064140     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593219..604442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPR71_RS02860 (OPR71_02860) trmD 593397..594158 (+) 762 WP_033905595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OPR71_RS02865 (OPR71_02865) rplS 594200..594553 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  OPR71_RS02870 (OPR71_02870) yacG 595549..595743 (-) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  OPR71_RS02875 (OPR71_02875) zapD 595902..596642 (-) 741 WP_267923003.1 cell division protein ZapD -
  OPR71_RS02880 (OPR71_02880) coaE 596670..597284 (-) 615 WP_017635920.1 dephospho-CoA kinase -
  OPR71_RS02885 (OPR71_02885) pilD 597285..598154 (-) 870 WP_158174153.1 prepilin peptidase Machinery gene
  OPR71_RS02890 (OPR71_02890) pilC 598219..599442 (-) 1224 WP_017820393.1 type II secretion system F family protein Machinery gene
  OPR71_RS02895 (OPR71_02895) pilB 599466..601151 (-) 1686 WP_267923005.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OPR71_RS02900 (OPR71_02900) - 601151..601585 (-) 435 WP_029803401.1 type IV pilin protein -
  OPR71_RS02910 (OPR71_02910) nadC 601849..602736 (-) 888 WP_005379983.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OPR71_RS02915 (OPR71_02915) ampD 602829..603380 (+) 552 WP_005379985.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45310.50 Da        Isoelectric Point: 10.3992

>NTDB_id=755905 OPR71_RS02890 WP_017820393.1 598219..599442(-) (pilC) [Vibrio alginolyticus strain AUSMDU00064140]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLNHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGAPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=755905 OPR71_RS02890 WP_017820393.1 598219..599442(-) (pilC) [Vibrio alginolyticus strain AUSMDU00064140]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACATCTGGGCAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAACCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACCGGTGTACCCTTAGTTCAGGCTTTAAAATTAGTCTCAGAAAATCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGGGCGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACTGATCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCGATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTCGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACCAGGC
AAGTGTTAGATCTTTCCGCCTGGACACAAAACTGGAGTCCGTTTATCGCACTAGGCTCCATTAGTTTATTCATTTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAATTTCCGGTCCTTGGGCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTCCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCACTAATTATCGTATTTTTAGGTATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.732

100

0.867
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.541

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398