Detailed information NTG0755904

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OPR71_RS02885
• Genome accession: NZ_CP110670
• Coordinates: 597285..598154 (-)
• Length: 289 a.a.
• NCBI ID: WP_158174153.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain AUSMDU00064140
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 592285..603154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPR71_RS02850 (OPR71_02850)	rpsP	592543..592791 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
OPR71_RS02855 (OPR71_02855)	rimM	592821..593369 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
OPR71_RS02860 (OPR71_02860)	trmD	593397..594158 (+)	762	WP_033905595.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OPR71_RS02865 (OPR71_02865)	rplS	594200..594553 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
OPR71_RS02870 (OPR71_02870)	yacG	595549..595743 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
OPR71_RS02875 (OPR71_02875)	zapD	595902..596642 (-)	741	WP_267923003.1	cell division protein ZapD	-
OPR71_RS02880 (OPR71_02880)	coaE	596670..597284 (-)	615	WP_017635920.1	dephospho-CoA kinase	-
OPR71_RS02885 (OPR71_02885)	pilD	597285..598154 (-)	870	WP_158174153.1	prepilin peptidase	Machinery gene
OPR71_RS02890 (OPR71_02890)	pilC	598219..599442 (-)	1224	WP_017820393.1	type II secretion system F family protein	Machinery gene
OPR71_RS02895 (OPR71_02895)	pilB	599466..601151 (-)	1686	WP_267923005.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OPR71_RS02900 (OPR71_02900)	-	601151..601585 (-)	435	WP_029803401.1	type IV pilin protein	-
OPR71_RS02910 (OPR71_02910)	nadC	601849..602736 (-)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32577.79 Da
• Isoelectric Point: 6.8455

>NTDB_id=755904 OPR71_RS02885 WP_158174153.1 597285..598154(-) (pilD) [Vibrio alginolyticus strain AUSMDU00064140]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=755904 OPR71_RS02885 WP_158174153.1 597285..598154(-) (pilD) [Vibrio alginolyticus strain AUSMDU00064140]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATAGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.852	93.426	0.484
pilD	Acinetobacter nosocomialis M2	51.481	93.426	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453