Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OKW98_RS25735 Genome accession   NZ_CP110644
Coordinates   5801676..5802893 (+) Length   405 a.a.
NCBI ID   WP_265387220.1    Uniprot ID   -
Organism   Pseudomonas sp. KU26590     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5795053..5805275 5801676..5802893 within 0


Gene organization within MGE regions


Location: 5795053..5805275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW98_RS25705 (OKW98_25710) - 5795053..5796483 (+) 1431 WP_265387215.1 IS1182 family transposase -
  OKW98_RS25710 (OKW98_25715) - 5797494..5797745 (+) 252 WP_265387216.1 hypothetical protein -
  OKW98_RS25715 (OKW98_25720) - 5797989..5798432 (-) 444 WP_265387217.1 hypothetical protein -
  OKW98_RS25725 (OKW98_25730) - 5799320..5799754 (-) 435 WP_265387218.1 pilin -
  OKW98_RS25730 (OKW98_25735) pilB 5799979..5801673 (+) 1695 WP_265387219.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OKW98_RS25735 (OKW98_25740) pilC 5801676..5802893 (+) 1218 WP_265387220.1 type II secretion system F family protein Machinery gene
  OKW98_RS25740 (OKW98_25745) pilD 5802896..5803768 (+) 873 WP_265387221.1 prepilin peptidase Machinery gene
  OKW98_RS25745 (OKW98_25750) coaE 5803765..5804385 (+) 621 WP_265387222.1 dephospho-CoA kinase -
  OKW98_RS25750 (OKW98_25755) yacG 5804385..5804588 (+) 204 WP_062378727.1 DNA gyrase inhibitor YacG -
  OKW98_RS25755 (OKW98_25760) - 5804799..5805275 (+) 477 WP_265387223.1 RidA family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44282.26 Da        Isoelectric Point: 10.0294

>NTDB_id=755603 OKW98_RS25735 WP_265387220.1 5801676..5802893(+) (pilC) [Pseudomonas sp. KU26590]
MATKAVKVSVYAWEGVDKKGTKVTGEINGHNPALVKAQLRKQGINPTKVRKKSVSIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGHDNPNMRKLVDDIKQEVAAGHSFATALRQKPLYFDDLFCNLVDAGEQAGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVVVVAFIVTGILLLKVVPQFQTIFEGFGAELPAFTLMVIGLSKIVQDYWWMILGGIALSIFLFR
RAYRTSEKFRNGLDRALLKVPVIGPLLYKSAVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFKNAVNKVKQDVSTGM
QLNFSMRSTGVFPMLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAFLGVIVGGLVIAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=755603 OKW98_RS25735 WP_265387220.1 5801676..5802893(+) (pilC) [Pseudomonas sp. KU26590]
ATGGCGACCAAAGCAGTAAAAGTCAGCGTCTATGCTTGGGAAGGGGTAGATAAAAAAGGGACCAAGGTCACTGGCGAAAT
CAATGGGCACAATCCTGCGCTGGTGAAAGCCCAACTGCGAAAGCAGGGTATCAACCCGACCAAAGTTCGTAAAAAGTCTG
TCTCGATCTTCGGTAAAGGCAAGAAGATCAAGCCGCTGGACATCGCGTTCTTCAGCCGCCAGATGGCGACCATGATGAAA
GCAGGTGTGCCGCTGTTGCAGTCATTCGACATTATCAGCGAGGGGCATGACAACCCGAACATGCGCAAGCTGGTGGACGA
CATCAAGCAGGAGGTCGCGGCAGGGCACAGTTTTGCCACGGCACTGCGGCAGAAACCCTTATATTTCGATGACCTTTTCT
GCAACCTAGTGGATGCGGGTGAACAAGCAGGTGCCCTCGAAACGTTGTTGGATCGAGTCGCGACCTACAAAGAAAAGACC
GAGTCGCTGAAAGCCAAGATCAAGAAAGCGATGACCTATCCGATTGCGGTGGTTGTCGTCGCGTTTATCGTAACGGGGAT
TTTGTTACTCAAAGTAGTACCCCAGTTTCAGACCATTTTTGAAGGGTTCGGAGCTGAGCTCCCAGCATTCACATTGATGG
TGATTGGCTTATCAAAAATTGTTCAGGACTATTGGTGGATGATCCTGGGCGGGATTGCGTTAAGTATTTTCTTGTTTCGG
CGCGCATACCGAACCTCCGAAAAGTTTAGAAATGGTCTTGACCGAGCACTCCTCAAAGTGCCCGTCATTGGTCCTTTGTT
GTACAAATCCGCAGTAGCGCGATACGCACGGACCTTGTCCACGACATTCGCCGCCGGCGTTCCACTGGTAGAGGCGCTTG
ATTCTGTCGCTGGCGCCACCGGAAATGTTGTCTTCAAGAACGCCGTCAACAAAGTCAAACAGGACGTCTCCACCGGCATG
CAACTTAACTTCTCCATGCGCAGCACCGGCGTGTTTCCGATGCTGGCCATACAGATGACCGCGATTGGGGAGGAATCCGG
CGCGCTGGATTCTATGCTTGATAAAGTCGCGACTTACTACGAGGACGAGGTCGATAACATGGTCGACAGCCTCACAAGCC
TCATGGAACCCATGATCATGGCTTTCCTCGGCGTCATTGTCGGCGGACTCGTGATCGCCATGTACCTTCCCATTTTCAAG
CTCGGACAAGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.802

100

0.758
  pilC Acinetobacter baumannii D1279779

60.149

99.753

0.6
  pilC Acinetobacter baylyi ADP1

59.314

100

0.598
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilC Vibrio cholerae strain A1552

42.469

100

0.425
  pilC Vibrio campbellii strain DS40M4

41.769

100

0.42
  pilG Neisseria gonorrhoeae MS11

41.791

99.259

0.415
  pilG Neisseria meningitidis 44/76-A

41.791

99.259

0.415
  pilC Thermus thermophilus HB27

39.401

99.012

0.39