Detailed information NTG0755604

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OKW98_RS25740
• Genome accession: NZ_CP110644
• Coordinates: 5802896..5803768 (+)
• Length: 290 a.a.
• NCBI ID: WP_265387221.1
• Uniprot ID: -
• Organism: Pseudomonas sp. KU26590
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	5795053..5805275	5802896..5803768	within	0

Gene organization within MGE regions

Location: 5795053..5805275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OKW98_RS25705 (OKW98_25710)	-	5795053..5796483 (+)	1431	WP_265387215.1	IS1182 family transposase	-
OKW98_RS25710 (OKW98_25715)	-	5797494..5797745 (+)	252	WP_265387216.1	hypothetical protein	-
OKW98_RS25715 (OKW98_25720)	-	5797989..5798432 (-)	444	WP_265387217.1	hypothetical protein	-
OKW98_RS25725 (OKW98_25730)	-	5799320..5799754 (-)	435	WP_265387218.1	pilin	-
OKW98_RS25730 (OKW98_25735)	pilB	5799979..5801673 (+)	1695	WP_265387219.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OKW98_RS25735 (OKW98_25740)	pilC	5801676..5802893 (+)	1218	WP_265387220.1	type II secretion system F family protein	Machinery gene
OKW98_RS25740 (OKW98_25745)	pilD	5802896..5803768 (+)	873	WP_265387221.1	prepilin peptidase	Machinery gene
OKW98_RS25745 (OKW98_25750)	coaE	5803765..5804385 (+)	621	WP_265387222.1	dephospho-CoA kinase	-
OKW98_RS25750 (OKW98_25755)	yacG	5804385..5804588 (+)	204	WP_062378727.1	DNA gyrase inhibitor YacG	-
OKW98_RS25755 (OKW98_25760)	-	5804799..5805275 (+)	477	WP_265387223.1	RidA family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32024.37 Da
• Isoelectric Point: 7.9048

>NTDB_id=755604 OKW98_RS25740 WP_265387221.1 5802896..5803768(+) (pilD) [Pseudomonas sp. KU26590]
MPLLDLLASSPLAFALCAFILGLLVGSFLNVVVYRLPKMMIRDWKIQSREMLDLPPEPQTETFNLILPHSRCPHCSHKIR
AWENIPVVSYLILGGKCSQCKAPISKRYPLVELACGLLSAFIAWHFGFGWQAAAMLVLTWGLLSMSLIDADHQLLPDAIV
LPLLWLGLIVNGFGLFTSLTDAVWGAVAGYLVLWCVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSIVG
AVLGLILLRLRNVETSTPIPFGPYLALAGWIALLWGDQITTSYLQIAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=755604 OKW98_RS25740 WP_265387221.1 5802896..5803768(+) (pilD) [Pseudomonas sp. KU26590]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCGCTGGCCTTCGCTCTATGCGCATTCATCCTCGGCCTGCTCGTCGGCAG
TTTCCTGAACGTAGTCGTCTACCGCCTCCCCAAAATGATGATCCGCGACTGGAAAATCCAATCCCGGGAAATGCTCGACC
TCCCCCCCGAGCCGCAAACAGAAACCTTCAACCTCATCCTCCCCCACTCCCGCTGCCCGCACTGCTCTCACAAAATACGC
GCGTGGGAAAACATTCCGGTGGTGAGTTATCTGATCCTCGGCGGCAAGTGTTCCCAGTGCAAAGCCCCCATCAGCAAGCG
CTACCCACTGGTTGAACTGGCCTGCGGCTTACTCTCAGCCTTTATCGCCTGGCATTTCGGTTTCGGCTGGCAGGCAGCGG
CGATGCTGGTGCTGACGTGGGGCCTGTTGTCGATGAGTCTGATCGACGCCGATCACCAGCTTCTGCCTGACGCAATCGTG
CTGCCACTGTTGTGGCTGGGCCTGATCGTCAACGGGTTCGGGCTGTTCACGTCACTGACTGATGCGGTGTGGGGCGCGGT
CGCCGGGTATCTGGTGTTGTGGTGTGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTTACGGCGACT
TCAAGTTGCTGGCGATGCTCGGCGCGTGGGGCGGGTGGCAGATTCTGCCGCTGACGATTCTGCTGTCGTCGATTGTCGGG
GCGGTGTTGGGCCTGATTCTGCTGCGTTTGCGCAATGTCGAGACCAGCACGCCGATCCCCTTCGGTCCTTATCTGGCGCT
TGCGGGGTGGATCGCATTGCTCTGGGGTGATCAAATAACCACTTCGTATTTGCAGATCGCCGGCTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.497	98.621	0.528
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter baumannii D1279779	52.92	94.483	0.5
pilD	Acinetobacter nosocomialis M2	52.19	94.483	0.493
pilD	Neisseria gonorrhoeae MS11	50.362	95.172	0.479