Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QJP92_RS01180 Genome accession   NZ_CP124372
Coordinates   230918..231574 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain AVS0151     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 225918..236574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP92_RS01150 (QJP92_01150) dcyD 226797..227783 (+) 987 WP_001128232.1 D-cysteine desulfhydrase -
  QJP92_RS01155 (QJP92_01155) tcyL 227798..228466 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QJP92_RS01160 (QJP92_01160) tcyN 228463..229215 (+) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QJP92_RS01165 (QJP92_01165) sdiA 229445..230167 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  QJP92_RS01170 (QJP92_01170) yecF 230235..230459 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QJP92_RS01175 (QJP92_01175) yecU 230446..230622 (-) 177 WP_001307856.1 protein YecU -
  QJP92_RS01180 (QJP92_01180) letA 230918..231574 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QJP92_RS01185 (QJP92_01185) uvrC 231571..233403 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QJP92_RS01190 (QJP92_01190) pgsA 233460..234008 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJP92_RS01210 (QJP92_01210) - 234592..235608 (-) 1017 WP_001531780.1 tyrosine-type recombinase/integrase -
  QJP92_RS01215 (QJP92_01215) - 235577..235840 (-) 264 WP_000833838.1 DUF4224 domain-containing protein -
  QJP92_RS01225 (QJP92_01225) - 236050..236232 (-) 183 WP_000916334.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=755441 QJP92_RS01180 WP_000611328.1 230918..231574(+) (letA) [Escherichia coli strain AVS0151]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=755441 QJP92_RS01180 WP_000611328.1 230918..231574(+) (letA) [Escherichia coli strain AVS0151]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482