Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OM794_RS09850 Genome accession   NZ_CP110535
Coordinates   2162098..2163330 (-) Length   410 a.a.
NCBI ID   WP_226249425.1    Uniprot ID   -
Organism   Halomonas sp. BDJS001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157098..2168330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM794_RS09815 (OM794_09815) - 2157271..2157645 (+) 375 WP_088701564.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  OM794_RS09820 (OM794_09820) - 2157736..2158566 (-) 831 WP_226249430.1 helix-turn-helix transcriptional regulator -
  OM794_RS09825 (OM794_09825) - 2158940..2159281 (+) 342 WP_226249429.1 hypothetical protein -
  OM794_RS09830 (OM794_09830) - 2159324..2160211 (-) 888 WP_226249428.1 DNA replication terminus site-binding protein -
  OM794_RS09835 (OM794_09835) yacG 2160251..2160484 (-) 234 WP_022523595.1 DNA gyrase inhibitor YacG -
  OM794_RS09840 (OM794_09840) coaE 2160519..2161121 (-) 603 WP_226249427.1 dephospho-CoA kinase -
  OM794_RS09845 (OM794_09845) pilD 2161204..2162049 (-) 846 WP_226249426.1 prepilin peptidase Machinery gene
  OM794_RS09850 (OM794_09850) pilC 2162098..2163330 (-) 1233 WP_226249425.1 type II secretion system F family protein Machinery gene
  OM794_RS09855 (OM794_09855) pilB 2163334..2165091 (-) 1758 WP_226249424.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OM794_RS09865 (OM794_09865) - 2165333..2165812 (+) 480 WP_319001073.1 pilin -
  OM794_RS09870 (OM794_09870) - 2165929..2166363 (+) 435 WP_226249423.1 anti-virulence regulator CigR family protein -
  OM794_RS09875 (OM794_09875) - 2166458..2167279 (+) 822 WP_226249422.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44594.43 Da        Isoelectric Point: 10.4142

>NTDB_id=755264 OM794_RS09850 WP_226249425.1 2162098..2163330(-) (pilC) [Halomonas sp. BDJS001]
MAKTARRRQTPATKLARWKWSGKGPQDRALSGEMIGRSKAEVAAELTKQHIVIGRISKKGNLGGSGRINPNDVMVFARQM
ATMIRAGIPLLQALQVVAESLKKPAMVALVQHMMSDVSSGASFSDALNRHPKHFDRLFVNLVSAGEQSGALDQMLDRIAT
YKEKVESLKARVKKALWYPTAVMTIGIAVTMLLLIKVVPEFESMFQSFGAELPALTQLTVNLSELAQRYWLAALGAVIAA
VLLLKISIQRSPSVAYRMHALLLRLPVLGDIMHKSAMARLSRTLATTFSSGVPLVEGLDTAAGATGNKVYERAVVQTRKD
VATGQQLHFAMRMTNRFPPLAIQMVSIGEEAGSLDAMLNRVADYYEEEVDNKVDALTSLMEPIIIVVLGVLVGGVVVSMY
LPIFDLGSAL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=755264 OM794_RS09850 WP_226249425.1 2162098..2163330(-) (pilC) [Halomonas sp. BDJS001]
ATGGCTAAAACGGCACGTCGACGCCAAACGCCCGCCACCAAGCTAGCGCGCTGGAAATGGAGTGGTAAAGGCCCACAGGA
TAGAGCGCTAAGCGGTGAGATGATTGGCCGCAGTAAAGCCGAAGTAGCCGCTGAACTCACCAAGCAGCATATCGTTATCG
GCCGGATTAGTAAAAAAGGCAACCTCGGCGGCAGCGGCCGCATTAATCCCAACGATGTCATGGTCTTTGCACGTCAAATG
GCCACCATGATTCGTGCTGGCATCCCGTTGCTGCAAGCGCTTCAAGTAGTGGCAGAGAGCCTCAAGAAACCGGCTATGGT
TGCCCTTGTTCAGCATATGATGAGCGATGTATCGTCAGGTGCCAGCTTCTCAGATGCATTGAACCGTCACCCCAAACACT
TTGATCGACTGTTTGTTAACCTCGTCAGTGCTGGTGAGCAGTCCGGTGCGTTGGATCAAATGCTCGATCGTATTGCGACC
TACAAAGAGAAGGTTGAGTCGCTGAAAGCGCGGGTTAAGAAAGCTCTTTGGTACCCCACCGCCGTTATGACGATTGGCAT
TGCAGTAACCATGTTGCTGTTAATTAAAGTGGTGCCTGAATTTGAAAGCATGTTCCAAAGCTTTGGCGCTGAACTCCCTG
CATTAACCCAACTGACCGTGAACTTATCCGAGCTTGCCCAGCGTTATTGGCTAGCCGCGCTCGGCGCAGTGATAGCTGCC
GTGCTTTTGCTTAAAATAAGCATTCAACGCTCGCCAAGCGTTGCTTACCGTATGCACGCACTGCTGCTTCGCTTGCCGGT
TCTTGGCGATATTATGCATAAATCTGCAATGGCTCGTTTGTCGCGTACATTAGCGACCACCTTTTCCTCGGGTGTACCAC
TTGTTGAAGGCTTAGACACCGCAGCCGGTGCCACAGGCAATAAAGTGTACGAACGCGCAGTGGTACAAACGCGCAAGGAC
GTCGCCACCGGGCAACAGCTACACTTCGCCATGCGTATGACCAACCGTTTCCCCCCTTTAGCGATTCAAATGGTCAGCAT
TGGTGAAGAGGCAGGGTCGCTTGATGCCATGCTCAATCGCGTGGCTGATTACTATGAAGAGGAAGTCGATAATAAGGTCG
ATGCCCTCACTTCGCTGATGGAACCGATTATTATCGTGGTACTGGGCGTGCTGGTCGGCGGCGTGGTGGTCTCTATGTAC
TTGCCCATCTTCGACTTGGGCTCTGCCCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

49.75

97.561

0.485
  pilC Pseudomonas stutzeri DSM 10701

49.123

97.317

0.478
  pilC Acinetobacter baumannii D1279779

48.866

96.829

0.473
  pilC Legionella pneumophila strain ERS1305867

47.619

97.317

0.463
  pilC Vibrio campbellii strain DS40M4

43.243

99.268

0.429
  pilG Neisseria gonorrhoeae MS11

42.893

97.805

0.42
  pilG Neisseria meningitidis 44/76-A

42.893

97.805

0.42
  pilC Vibrio cholerae strain A1552

42.26

99.268

0.42