NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	OM794_RS09845	Genome accession	NZ_CP110535
Coordinates	2161204..2162049 (-)	Length	281 a.a.
NCBI ID	WP_226249426.1	Uniprot ID	-
Organism	Halomonas sp. BDJS001
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2156204..2167049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OM794_RS09815 (OM794_09815)	-	2157271..2157645 (+)	375	WP_088701564.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
OM794_RS09820 (OM794_09820)	-	2157736..2158566 (-)	831	WP_226249430.1	helix-turn-helix transcriptional regulator	-
OM794_RS09825 (OM794_09825)	-	2158940..2159281 (+)	342	WP_226249429.1	hypothetical protein	-
OM794_RS09830 (OM794_09830)	-	2159324..2160211 (-)	888	WP_226249428.1	DNA replication terminus site-binding protein	-
OM794_RS09835 (OM794_09835)	yacG	2160251..2160484 (-)	234	WP_022523595.1	DNA gyrase inhibitor YacG	-
OM794_RS09840 (OM794_09840)	coaE	2160519..2161121 (-)	603	WP_226249427.1	dephospho-CoA kinase	-
OM794_RS09845 (OM794_09845)	pilD	2161204..2162049 (-)	846	WP_226249426.1	prepilin peptidase	Machinery gene
OM794_RS09850 (OM794_09850)	pilC	2162098..2163330 (-)	1233	WP_226249425.1	type II secretion system F family protein	Machinery gene
OM794_RS09855 (OM794_09855)	pilB	2163334..2165091 (-)	1758	WP_226249424.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OM794_RS09865 (OM794_09865)	-	2165333..2165812 (+)	480	WP_319001073.1	pilin	-
OM794_RS09870 (OM794_09870)	-	2165929..2166363 (+)	435	WP_226249423.1	anti-virulence regulator CigR family protein	-

Sequence

Protein

Download Length: 281 a.a. Molecular weight: 30707.07 Da Isoelectric Point: 7.6034

                                >NTDB_id=755263 OM794_RS09845 WP_226249426.1 2161204..2162049(-) (pilD) [Halomonas sp. BDJS001]

MHHLPFTLWLIVLLMGLCLGSFLNVVITRLPVMLMRGWRNEAREALELGTEHSPRFNLATPASMCPRCEAPIAWHDNLPL

IGWIKRRGRCAECQTPISIQYPLVEIAGGLLAIAVLALHGLTAESIFVYGACLVLLVLAVIDFRTQLLPDVITLPLLWAG

LLFQLLFQPPMLPSAVIGAMAGYLSLWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWSFLPLMLILSAGIGAIVGLAA

QACSPRLRGAPLPFGPFLALAGWVALLVGDEIMAMYLNLLM

Nucleotide

Download Length: 846 bp

                                >NTDB_id=755263 OM794_RS09845 WP_226249426.1 2161204..2162049(-) (pilD) [Halomonas sp. BDJS001]

ATGCATCACCTTCCGTTTACGCTGTGGTTAATCGTTTTATTGATGGGACTATGCCTGGGCAGTTTTCTAAATGTGGTGAT

TACTCGCCTTCCGGTGATGCTGATGCGGGGCTGGCGCAATGAAGCCCGGGAAGCACTTGAGCTTGGCACCGAGCACTCGC

CGCGCTTTAACCTGGCCACACCCGCTTCCATGTGCCCACGCTGTGAAGCCCCTATTGCGTGGCACGACAACCTACCGTTA

ATTGGGTGGATAAAACGCCGTGGGCGCTGTGCCGAGTGCCAAACGCCTATCAGCATTCAGTACCCACTGGTGGAAATAGC

AGGGGGCTTGTTGGCCATAGCAGTGCTAGCGCTCCACGGGCTTACTGCAGAGTCGATCTTCGTTTACGGCGCCTGCTTAG

TACTGTTAGTGCTCGCCGTCATCGACTTTCGCACCCAGCTACTGCCCGACGTGATTACCCTACCCTTACTTTGGGCAGGG

TTACTGTTTCAGCTTCTTTTCCAGCCACCGATGCTGCCGAGTGCCGTTATCGGCGCCATGGCAGGCTATCTTTCCCTGTG

GAGTTTTTATTGGCTATTCAAACTGGTCACTGGCAAAGAGGGAATGGGCTATGGCGACTTTAAGCTGCTCGCGGCGCTGG

GCGCCTGGTTGGGATGGAGTTTTTTACCGCTGATGTTGATCCTTTCCGCAGGGATTGGCGCCATTGTTGGGCTAGCTGCC

CAGGCCTGCTCACCTCGCCTACGCGGCGCACCGCTTCCCTTTGGCCCGTTTCTCGCCCTCGCGGGCTGGGTGGCCCTGTT

AGTCGGTGATGAAATAATGGCAATGTATCTCAACCTGCTCATGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(14-116)

Type IV leader peptidase family (Peptidase_A24)

(132-238)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	49.296	100	0.498
pilD	Acinetobacter baumannii D1279779	47.636	97.865	0.466
pilD	Acinetobacter nosocomialis M2	47.636	97.865	0.466
pilD	Vibrio campbellii strain DS40M4	43.509	100	0.441
pilD	Neisseria gonorrhoeae MS11	44.828	92.883	0.416

Detailed information NTG0755263