Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ONG97_RS04185 Genome accession   NZ_CP110483
Coordinates   763818..765050 (-) Length   410 a.a.
NCBI ID   WP_265115374.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain XY2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 758818..770050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS04165 (ONG97_04165) spoVS 758927..759187 (-) 261 WP_013859169.1 stage V sporulation protein SpoVS -
  ONG97_RS04170 (ONG97_04170) - 759558..760358 (-) 801 WP_118499368.1 TIGR00282 family metallophosphoesterase -
  ONG97_RS04175 (ONG97_04175) rny 760445..762007 (-) 1563 WP_013859167.1 ribonuclease Y -
  ONG97_RS04180 (ONG97_04180) recA 762482..763549 (-) 1068 WP_019721123.1 recombinase RecA Machinery gene
  ONG97_RS04185 (ONG97_04185) cinA 763818..765050 (-) 1233 WP_265115374.1 competence/damage-inducible protein A Machinery gene
  ONG97_RS04190 (ONG97_04190) pgsA 765222..765800 (-) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ONG97_RS04195 (ONG97_04195) - 765856..766761 (-) 906 WP_367616805.1 helix-turn-helix domain-containing protein -
  ONG97_RS04200 (ONG97_04200) - 766778..767569 (-) 792 WP_017554614.1 DUF3388 domain-containing protein -
  ONG97_RS04205 (ONG97_04205) - 767760..768020 (-) 261 WP_013859159.1 DUF3243 domain-containing protein -
  ONG97_RS04210 (ONG97_04210) - 768204..768926 (-) 723 WP_013859158.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44896.52 Da        Isoelectric Point: 5.5145

>NTDB_id=755064 ONG97_RS04185 WP_265115374.1 763818..765050(-) (cinA) [Heyndrickxia coagulans strain XY2]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEDRADLLIFTGGLGPTKDDLTKET
IASHIGKKLVTDEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSRNHYYLLLPGPPHELEPMF
IHYASPAIQDELETIEKIESRVLRFFGIGESQLETEIRQILETQSNPTVAPLAKEGEVTLRITAKHQSVATANQMIDQVE
KEILQIAGSYFYGYNDTTLMEALLEKLSEKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETAAYLLELSGSRNNVRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=755064 ONG97_RS04185 WP_265115374.1 763818..765050(-) (cinA) [Heyndrickxia coagulans strain XY2]
GTGAATGCCGAAATAATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAACGCCACATTTATTGCTGC
GCAATTGGCGGAAATCGGCGTGGATGTGTACTATCAGACCGTTGTCGGCGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GTACAGCGGAGGACCGCGCCGATTTATTGATTTTTACTGGCGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCATATCGGAAAAAAACTGGTCACAGACGAAGATGCCATGCGTTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCGCTTGTCATTGAAGGCTCGAAAGTGTTTCCGAATGACCACGGCATGG
CGCCGGGCATGCTGGCCAAAAGTCGAAACCACTATTACTTGCTGCTCCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTATGCCAGTCCCGCGATCCAGGATGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTTCTCCGTTTCTTCGG
GATCGGCGAATCCCAACTGGAAACAGAAATCCGCCAAATATTGGAAACCCAGAGCAATCCGACTGTTGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTCAGGATTACGGCGAAACACCAGTCGGTGGCAACGGCGAACCAAATGATCGATCAAGTGGAA
AAAGAGATTTTGCAAATTGCCGGATCGTATTTTTACGGTTATAACGATACGACGTTAATGGAGGCCCTGCTTGAAAAACT
TTCAGAAAAACAGCTGACGCTGGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACGATGCTGAAAGGCGGCGTTGTTGTCTATTCGAACGAAGCGAAGATGAAGCTTGCCAAAGTGAAAAAAGAA
ACACTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGCAGCATCATGGATGCCGA
CATTGGCATCAGTTTTACAGGTGTGGCCGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CCATAAAAGGGAAAGAAACGGCCGCCTATCTGTTGGAACTTTCCGGATCCCGGAACAACGTCCGCACGAGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.373

99.512

0.561
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.476
  cinA Streptococcus mitis SK321

46.411

100

0.473
  cinA Streptococcus pneumoniae R6

46.172

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.172

100

0.471
  cinA Streptococcus pneumoniae D39

45.933

100

0.468
  cinA Streptococcus mutans UA159

45.113

97.317

0.439
  cinA Streptococcus suis isolate S10

39.683

92.195

0.366