Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ONG97_RS04180 Genome accession   NZ_CP110483
Coordinates   762482..763549 (-) Length   355 a.a.
NCBI ID   WP_019721123.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain XY2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757482..768549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS04160 (ONG97_04160) - 757814..758725 (-) 912 WP_265115373.1 peptidase U32 family protein -
  ONG97_RS04165 (ONG97_04165) spoVS 758927..759187 (-) 261 WP_013859169.1 stage V sporulation protein SpoVS -
  ONG97_RS04170 (ONG97_04170) - 759558..760358 (-) 801 WP_118499368.1 TIGR00282 family metallophosphoesterase -
  ONG97_RS04175 (ONG97_04175) rny 760445..762007 (-) 1563 WP_013859167.1 ribonuclease Y -
  ONG97_RS04180 (ONG97_04180) recA 762482..763549 (-) 1068 WP_019721123.1 recombinase RecA Machinery gene
  ONG97_RS04185 (ONG97_04185) cinA 763818..765050 (-) 1233 WP_265115374.1 competence/damage-inducible protein A Machinery gene
  ONG97_RS04190 (ONG97_04190) pgsA 765222..765800 (-) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ONG97_RS04195 (ONG97_04195) - 765856..766761 (-) 906 WP_367616805.1 helix-turn-helix domain-containing protein -
  ONG97_RS04200 (ONG97_04200) - 766778..767569 (-) 792 WP_017554614.1 DUF3388 domain-containing protein -
  ONG97_RS04205 (ONG97_04205) - 767760..768020 (-) 261 WP_013859159.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38403.40 Da        Isoelectric Point: 4.7416

>NTDB_id=755063 ONG97_RS04180 WP_019721123.1 762482..763549(-) (recA) [Heyndrickxia coagulans strain XY2]
MNDRQQALDQALKQIEKQFGKGSIMRLGEQTDRVVSTIPTGSLALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPRAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGNKT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQGRENAKQFLKENADLKNEIAAK
IREHYDLAEDAGSHENEKAADEKEAVEGQEELNLE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=755063 ONG97_RS04180 WP_019721123.1 762482..763549(-) (recA) [Heyndrickxia coagulans strain XY2]
GTGAATGATCGTCAACAAGCCTTAGACCAGGCTCTGAAACAAATAGAAAAGCAATTTGGCAAGGGTTCCATTATGCGTCT
GGGCGAGCAGACCGACCGGGTTGTCTCCACGATCCCGACCGGTTCGCTTGCGCTTGATATTGCCCTTGGTGTCGGCGGCT
ACCCGCGCGGCCGCGTCATTGAAATATACGGCCCTGAAAGTTCCGGTAAAACAACGGTTGCCCTGCATGCGATTGCGGAA
GTCCAGGCACAGGGCGGACAGGCTGCCTTTATTGATGCGGAACACGCACTTGACCCGGTTTATGCCCAAAAGCTCGGTGT
CAACATTGATGAACTGCTCCTGTCCCAGCCGGATACGGGCGAACAGGCGCTGGAAATTGCAGAAGCGCTCGTCCGCAGCG
GCGCAGTGGACATTATTGTCGTTGACTCTGTTGCTGCGCTTGTGCCGCGAGCGGAAATTGAAGGAGAAATGGGCGATTCC
CATGTCGGCCTCCAGGCACGGCTGATGTCCCAGGCGCTGCGGAAATTATCGGGCGCGATCAACAAATCAAACACGATTGC
GATTTTCATTAACCAGATCCGGGAAAAAGTCGGCGTGATGTTCGGCAATCCTGAAGTCACACCGGGCGGACGCGCGCTCA
AATTTTACTCGTCCGTGCGCCTTGAAGTGCGCCGCGCCGAACAGATCAAACAAGGGAGTGACATTGTCGGCAACAAAACG
AAAATCAAGGTTGTCAAAAACAAAGTAGCGCCTCCGTTTAAAACGGCAGAAGTGGATATTATGTACGGCGAAGGGATCTC
AAAAGAAGGCGAGATCGTCGATATGGGAAGCGACCTTGACATCATCCAAAAAAGCGGGGCCTGGTATGCTTATAACGGCG
AGCGGCTCGGCCAGGGGCGTGAAAATGCGAAACAGTTTTTAAAGGAAAATGCGGATCTGAAAAATGAGATTGCCGCAAAA
ATCCGGGAACATTACGACCTGGCGGAAGATGCCGGTTCCCATGAAAACGAAAAAGCTGCAGATGAAAAGGAAGCTGTGGA
AGGACAGGAAGAATTGAATTTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.113

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

74.194

96.056

0.713
  recA Streptococcus pneumoniae D39

66.482

100

0.676
  recA Streptococcus pneumoniae Rx1

66.482

100

0.676
  recA Streptococcus pneumoniae R6

66.482

100

0.676
  recA Streptococcus pneumoniae TIGR4

66.482

100

0.676
  recA Streptococcus mutans UA159

68.286

98.592

0.673
  recA Streptococcus mitis SK321

66.76

100

0.673
  recA Streptococcus mitis NCTC 12261

66.76

100

0.673
  recA Streptococcus pyogenes NZ131

70.732

92.394

0.654
  recA Lactococcus lactis subsp. cremoris KW2

67.267

93.803

0.631
  recA Neisseria gonorrhoeae MS11

66.46

90.704

0.603
  recA Neisseria gonorrhoeae MS11

66.46

90.704

0.603
  recA Neisseria gonorrhoeae strain FA1090

66.46

90.704

0.603
  recA Vibrio cholerae strain A1552

66.355

90.423

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

90.423

0.6
  recA Ralstonia pseudosolanacearum GMI1000

68.387

87.324

0.597
  recA Acinetobacter baumannii D1279779

64.596

90.704

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

92.394

0.583
  recA Glaesserella parasuis strain SC1401

60.411

96.056

0.58
  recA Acinetobacter baylyi ADP1

63.777

90.986

0.58
  recA Helicobacter pylori 26695

63.665

90.704

0.577
  recA Helicobacter pylori strain NCTC11637

63.665

90.704

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.354

90.704

0.575
  recA Pseudomonas stutzeri DSM 10701

63.438

90.141

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

90.141

0.555